PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004490-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HB-other
Protein Properties Length: 581aa    MW: 61517.6 Da    PI: 6.1996
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004490-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.47.4e-0655753656
                     HCTS-HHHHHHHHHHHHHHHH CS
         Homeobox 36 klgLterqVkvWFqNrRakek 56
                     k++++ +qV +WFqNrR+  +
  AHYPO_004490-RA 55 KISVQMKQVWNWFQNRRYALR 75
                     559999***********9655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-81276IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-41377IPR009057Homeodomain-like
PROSITE profilePS500719.1671377IPR001356Homeobox domain
CDDcd000860.001181377No hitNo description
PfamPF167191.9E-41126252IPR032001SAWADEE domain
CDDcd000240.00521139172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MGRHPTHGAP SFRFHPTEVA QMESILREHA GQVPAREFLM SLAEKFSNSP ERSGKISVQM  60
KQVWNWFQNR RYALRSKLVK SPGKSHMPPN PQGEVATLRN LSPVPQQAPI PTGHNMVRNS  120
SENPLMEFEA KSARDGAWYD VQQFLSHRYL ETGNPEVLVR FAGFGQEEDE WVNIRKHVRQ  180
RSLPCEASEC IVVLPGDLIL CFQEGKDQAL YFDAHVLDAQ RRRHDVRGCR CRFLVRYDHD  240
QSEEIVPLRK VCRRPETDYR LQQLHTANES ASASVSGDSI KPTVDPVFST MSGMTSPNPS  300
AAIAFPSSTT INATTSVLHS APAGISNPSP TLISASAPSL TPKSAPTSSS SLNPVLAPTP  360
SSSSIPVAAP SPSFTPISVT TLSSTPVSAP NPSLTSSASP TPSLLPISQP TSTAIQAQSS  420
GSALVSAPSP SPSPSPSPSP SSTFIATASP TPAPVSVQSS TLVAAPELAK TESDKPASSA  480
GEASFQENNN NPGTASIIVE VKKDDSSIPE TTNTVVAGNS MSLGEMSDNA TETAPAREMM  540
GSIAPNEPIT VSAAVTEGAP IISTGAESSN PIASTDDSKE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A5e-491262564134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B5e-491262564134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A5e-491262564134SHH1 SAWADEE
4iur_B5e-491262564134SHH1 SAWADEE
4iut_A5e-491262564134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B5e-491262564134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A5e-491262564134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B5e-491262564134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A5e-491262564134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B5e-491262564134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021773754.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
TrEMBLA0A0K9RVN20.0A0A0K9RVN2_SPIOL; Uncharacterized protein
STRINGXP_010675448.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-120sequence-specific DNA binding transcription factors;sequence-specific DNA binding