PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_004490-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | HB-other | ||||||||
Protein Properties | Length: 581aa MW: 61517.6 Da PI: 6.1996 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 17.4 | 7.4e-06 | 55 | 75 | 36 | 56 |
HCTS-HHHHHHHHHHHHHHHH CS Homeobox 36 klgLterqVkvWFqNrRakek 56 k++++ +qV +WFqNrR+ + AHYPO_004490-RA 55 KISVQMKQVWNWFQNRRYALR 75 559999***********9655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.99E-8 | 12 | 76 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-4 | 13 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.167 | 13 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 0.00118 | 13 | 77 | No hit | No description |
Pfam | PF16719 | 1.9E-41 | 126 | 252 | IPR032001 | SAWADEE domain |
CDD | cd00024 | 0.00521 | 139 | 172 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 581 aa Download sequence Send to blast |
MGRHPTHGAP SFRFHPTEVA QMESILREHA GQVPAREFLM SLAEKFSNSP ERSGKISVQM 60 KQVWNWFQNR RYALRSKLVK SPGKSHMPPN PQGEVATLRN LSPVPQQAPI PTGHNMVRNS 120 SENPLMEFEA KSARDGAWYD VQQFLSHRYL ETGNPEVLVR FAGFGQEEDE WVNIRKHVRQ 180 RSLPCEASEC IVVLPGDLIL CFQEGKDQAL YFDAHVLDAQ RRRHDVRGCR CRFLVRYDHD 240 QSEEIVPLRK VCRRPETDYR LQQLHTANES ASASVSGDSI KPTVDPVFST MSGMTSPNPS 300 AAIAFPSSTT INATTSVLHS APAGISNPSP TLISASAPSL TPKSAPTSSS SLNPVLAPTP 360 SSSSIPVAAP SPSFTPISVT TLSSTPVSAP NPSLTSSASP TPSLLPISQP TSTAIQAQSS 420 GSALVSAPSP SPSPSPSPSP SSTFIATASP TPAPVSVQSS TLVAAPELAK TESDKPASSA 480 GEASFQENNN NPGTASIIVE VKKDDSSIPE TTNTVVAGNS MSLGEMSDNA TETAPAREMM 540 GSIAPNEPIT VSAAVTEGAP IISTGAESSN PIASTDDSKE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuq_A | 5e-49 | 126 | 256 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 5e-49 | 126 | 256 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 5e-49 | 126 | 256 | 4 | 134 | SHH1 SAWADEE |
4iur_B | 5e-49 | 126 | 256 | 4 | 134 | SHH1 SAWADEE |
4iut_A | 5e-49 | 126 | 256 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 5e-49 | 126 | 256 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 5e-49 | 126 | 256 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 5e-49 | 126 | 256 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 5e-49 | 126 | 256 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 5e-49 | 126 | 256 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021773754.1 | 0.0 | protein SAWADEE HOMEODOMAIN HOMOLOG 2-like | ||||
TrEMBL | A0A0K9RVN2 | 0.0 | A0A0K9RVN2_SPIOL; Uncharacterized protein | ||||
STRING | XP_010675448.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 1e-120 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_004490-RA |