PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004345-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family M-type_MADS
Protein Properties Length: 94aa    MW: 10891.5 Da    PI: 10.0256
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004345-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF102.12.1e-322777151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey++
  AHYPO_004345-RA 27 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN 77
                     79***********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-411978IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.4311979IPR002100Transcription factor, MADS-box
CDDcd002653.35E-402077No hitNo description
SuperFamilySSF554557.06E-312088IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002175IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-342141IPR002100Transcription factor, MADS-box
PfamPF003191.3E-272875IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-344156IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-345677IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MEFNPQSMET GSPSSQRKLG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCDAE  60
VALIVFSSRG RLYEYANHRY IIYLINSYFP FYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-211977159Myocyte-specific enhancer factor 2B
1tqe_Q3e-211977159Myocyte-specific enhancer factor 2B
1tqe_R3e-211977159Myocyte-specific enhancer factor 2B
1tqe_S3e-211977159Myocyte-specific enhancer factor 2B
6c9l_A3e-211977159Myocyte-specific enhancer factor 2B
6c9l_B3e-211977159Myocyte-specific enhancer factor 2B
6c9l_C3e-211977159Myocyte-specific enhancer factor 2B
6c9l_D3e-211977159Myocyte-specific enhancer factor 2B
6c9l_E3e-211977159Myocyte-specific enhancer factor 2B
6c9l_F3e-211977159Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021764207.16e-46floral homeotic protein AGAMOUS-like isoform X2
RefseqXP_021764209.15e-46floral homeotic protein AGAMOUS-like isoform X4
SwissprotQ408852e-39AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLA0A221C7445e-45A0A221C744_AMATR; AGAMOUS protein
STRINGXP_010687169.15e-44(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.26e-41MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]