PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004323-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Trihelix
Protein Properties Length: 301aa    MW: 33809.2 Da    PI: 7.345
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004323-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.97e-1527117186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W+++ + +Liea  ++  +l+rg+l++++W+ev++++     + ++ +r+ +qCk++++ l+k+yk +k++  + +   +s +p+f+ l+
  AHYPO_004323-RA  27 CWSEDATFTLIEAWGQRYIELNRGNLRQKQWQEVADAVnsrhgHIKKARRTDVQCKNRIDTLKKKYKIEKARVLDSNGSYKSIWPFFTPLD 117
                      7*************************************976666667799********************9988876667779****9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.4E-2525119No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAENPDSSST PSLAMISSRP APAREDCWSE DATFTLIEAW GQRYIELNRG NLRQKQWQEV  60
ADAVNSRHGH IKKARRTDVQ CKNRIDTLKK KYKIEKARVL DSNGSYKSIW PFFTPLDQLI  120
GSTMPLKKLS PSPPMAVPLV SHRTPAIVPQ KRPAPSPSPS IPSSAPFRGE ESSYFRKNYS  180
AIAAAAAAAA DSEEEDEEEE EEEEEVEVSG GESSEADGIR KLARVIEKFG EVYARVEGEK  240
QRQMIELEKQ RMQFAKELEC QRMQMLVEMQ VQLEKIKRAK RSDSNACSGG NWVKVKCFSI  300
*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021843696.11e-160trihelix transcription factor ASIL2-like
TrEMBLA0A0K9QIZ71e-159A0A0K9QIZ7_SPIOL; Uncharacterized protein
STRINGXP_010686207.11e-149(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-69sequence-specific DNA binding transcription factors