PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_004266-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

G2-like

Protein Properties

Length: 290aa MW: 31763.8 Da PI: 5.9891

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_004266-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.1	4.7e-34	18	72	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl AHYPO_004266-RA 18 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 72 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.688	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	6.09E-18	16	72	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-32	16	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-25	18	73	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-9	20	71	IPR001005	SANT/Myb domain
Pfam	PF14379	1.4E-10	104	140	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MDPVCGNSLS NNPNLSSKQR LRWTHELHER FVDAVAQLGG PDRATPKGVL RVMGVQGLTI 60 YHVKSHLQKY RLAKYLPDSS SEGKKADKKE SAELLYGLES SSGMQITEAL KLQMEVQRQL 120 QLRIEAQGKY LKKIIEEQQR LSETLAEVTG CGDSGSGSDK CLGCPDSIKS DPATPAPSSE 180 SPFGKSSKEF AVAKTLSLDE SFSSQQEPST PDSTCFDAIT SKNCKDERSG KKPCMTSDEA 240 LSSQEMIFTQ QMLESTMTPS FQQGHPIYVG EPLDHSALLL RKEDQAEKL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-24	18	75	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-24	18	75	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-24	18	75	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-24	18	75	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-24	18	75	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-24	18	75	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-24	18	75	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-24	18	75	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019106686.1	1e-150	PREDICTED: myb family transcription factor PHL7 isoform X1
Swissprot	Q9SJW0	1e-102	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A5C966	1e-121	A5C966_VITVI; Uncharacterized protein
STRING	XP_010686602.1	1e-149	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-104	G2-like family protein

Link Out ? help Back to Top
Phytozome	AHYPO_004266-RA