PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004254-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Trihelix
Protein Properties Length: 392aa    MW: 44367.6 Da    PI: 5.2845
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004254-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.61.7e-28280367187
         trihelix   1 rWtkqevlaLiearremeerlrr..gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+ +ev+aLi++r  ++++++   +++k+p Weevs+ m++ g++r++k+Ckekw+nlnk+yk+ + + kk+ +e+ ++cpyf++lea
  AHYPO_004254-RA 280 RWPTSEVQALITLRAALDHKFSGfgSNSKAPVWEEVSADMAKMGYTRTAKKCKEKWDNLNKYYKRATSNGKKH-AENAKSCPYFNELEA 367
                      8*********************64589***************************************9999998.677789*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.166273339IPR017877Myb-like domain
SMARTSM007171.2E-4277341IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-4277345IPR009057Homeodomain-like
CDDcd122034.82E-23279346No hitNo description
PfamPF138379.0E-23279368No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEEIFTGDRQ LTAGNFPEEL TPFPEPQSQL QSSTVDLFYP QPTPLIPSPT PQKLRPIRSN  60
GRNPPEYSNQ ISQDEALVRI NGYSSSELGF LPFQTNMGGN VGNLEEDVNS AEALIKLKSE  120
MDAQLISNFK SQVSQLNFSL SSSSDGSGEG EEPSSSGKPR KKRRKNMELF LQDLMNQVIH  180
KQEQMHQQLM DMFERKEKER IDREEAWRRQ EMERAKEEQQ IRAQEAARNL ALISFIRNAL  240
GVPEIQVPEL LPFPRSEENG SSECVPTPTE QDKFDPNNKR WPTSEVQALI TLRAALDHKF  300
SGFGSNSKAP VWEEVSADMA KMGYTRTAKK CKEKWDNLNK YYKRATSNGK KHAENAKSCP  360
YFNELEALYK NRLITGAKPD SPTVEDSEPT T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160164KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686620.11e-176PREDICTED: trihelix transcription factor GT-2
TrEMBLA0A0K9RK771e-159A0A0K9RK77_SPIOL; Uncharacterized protein
STRINGXP_010686620.11e-175(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.18e-45Trihelix family protein