PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_004160-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Dof

Protein Properties

Length: 273aa MW: 30730.2 Da PI: 8.3854

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_004160-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.9	3.9e-37	37	94	2	59
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 +++alkcprCdstntkfCyynny+ sqPr+fCkaC+r+WtkGG+lrnvPvGggr++++ AHYPO_004160-RA 37 QDEALKCPRCDSTNTKFCYYNNYNKSQPRHFCKACKRHWTKGGTLRNVPVGGGRKNKR 94 7899************************************************976665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-25	34	94	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-32	39	93	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.559	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MGLSSKQVSR DKHGWNQAFL EPKSPSLKKQ APNVQQQDEA LKCPRCDSTN TKFCYYNNYN 60 KSQPRHFCKA CKRHWTKGGT LRNVPVGGGR KNKRLKASNS DPKAASKTVT TTTTTNNINK 120 MLLQLGQQNQ SKFNLPLGES SINGYHEAYY QTLIKQQPSS LQESTITFNK VLNDGLNLGS 180 CISIPNHNDH QNDDHLQFPY INLGSFDSNP NNPCSISSPN FYNQANGLEE TMMNSEIDMS 240 NNWGWEDFDK FVCVEADLSM PWEETEIKPR GP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021726405.1	1e-104	dof zinc finger protein DOF4.7-like
TrEMBL	A0A0K9R3V0	7e-95	A0A0K9R3V0_SPIOL; Uncharacterized protein
STRING	XP_010686557.1	1e-101	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	3e-31	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	AHYPO_004160-RA