PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_004123-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Dof

Protein Properties

Length: 323aa MW: 35897.4 Da PI: 8.1141

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_004123-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.4e-39	48	108	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ l+cprCdstntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ AHYPO_004123-RA 48 QQQGLRCPRCDSTNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 108 68899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.6E-33	50	106	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-27	51	106	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.497	52	106	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	54	90	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MMGNISSPSN EWSSQNKNDV LNNNCNMGTA STVSIAGVVD QEFQQQQQQQ GLRCPRCDST 60 NTKFCYYNNY SLSQPRHFCK ACKRYWTRGG TLRNVPVGGG CRKNKRVKRP SSFTSSSSSF 120 INNTSLTNIN TNTNTNTSLE QASNVHDLGN HPLFYGLPTN HSPNSNINFP FSRYDLQNPS 180 QISGLGLGFS SGLVHNINSM NLLHHHQSPQ NSKQVFHDLI SSNPLLLHPM KGGNNFQTIL 240 PSYEDHDLHI KNVKMEFDGQ NRTLDHHWNH TTQNQIDDDH QTMVSSSDPS IIWGSSSTTS 300 TNNVSTWLDP SNNLGSTVPS LI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010686431.1	9e-97	PREDICTED: dof zinc finger protein DOF1.4
TrEMBL	A0A0K9RKK6	2e-84	A0A0K9RKK6_SPIOL; Uncharacterized protein
STRING	XP_010686431.1	4e-96	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	3e-37	Dof family protein

Link Out ? help Back to Top
Phytozome	AHYPO_004123-RA