PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_004081-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | bHLH | ||||||||
Protein Properties | Length: 480aa MW: 53304.1 Da PI: 6.5177 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.5 | 6.6e-10 | 288 | 335 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq AHYPO_004081-RA 288 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 335 8**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.59E-17 | 282 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.84E-10 | 282 | 339 | No hit | No description |
PROSITE profile | PS50888 | 15.618 | 284 | 334 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.4E-17 | 284 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-7 | 288 | 335 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-9 | 290 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MNRAMPEMLH YLNMPGDIVG VKGMEMSVLE RQRMVFKWQQ EQLPQVQQPQ QQELSCFNDL 60 SMLSFLPAEV QDFQGPSMNY GPSPVTTAPT LNELLNRPIK ADPGAENGWM DFGMPKSGIS 120 VGSLGIESAG QVHNSSGYGM SYNIFRTTSC PPSVAETAAS LKVAHDAKVR NSLPSNQKLS 180 AAAGRESFKK RKAERNNSTP QVMDTEEDSK TKKSKGCAEE EESKITEQHC NRHSNSSQSN 240 QQESNENKKD KKNKETSGCT SKDNSKASEV QKPDYIHVRA RRGQATDSHS LAERVRREKI 300 SERMKYLQDL VPGCNKITGK AGMLDEIINY VQSLQRQVEF LSMKLAAVNP RLDFNIDDLI 360 AKEVFAACSA SLPTMGASTD LSNPSYLQYN PIEQMDLVCA SAVALNPIDL ALRRSISAPV 420 SVPENYLDTS CFNKMPHSLQ WDANAQNIYN MEFQQERSTT FPLQTFTGTI EASNLKMEM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA to G box 5'-CACGTG-3' and, to a lower extent, to E-box 5'-CANNTG-3' in vitro. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light. {ECO:0000269|PubMed:18988809, ECO:0000269|PubMed:24130508}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates strongly in response to blue light due to reduced preventing 26S proteasome-mediated degradation in an ADO1/ZTL and ADO2/LKP2 dependent manner, but levels decrease in the absence of blue light via 26S proteasome degradation (at protein level). {ECO:0000269|PubMed:24101505}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021738627.1 | 0.0 | transcription factor HBI1-like | ||||
Swissprot | Q8GY61 | 2e-62 | BH063_ARATH; Transcription factor bHLH63 | ||||
TrEMBL | A0A0K9QN27 | 0.0 | A0A0K9QN27_SPIOL; Uncharacterized protein | ||||
STRING | XP_010690861.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 1e-62 | cryptochrome-interacting basic-helix-loop-helix 1 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_004081-RA |