PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003989-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family G2-like
Protein Properties Length: 384aa    MW: 42964.8 Da    PI: 6.6145
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003989-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17.4e-32245300156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W+peLH+rFv+a+++LGG+++AtPk+i+elm v+gLt+++vkSHLQkYRl+
  AHYPO_003989-RA 245 KQRRCWSPELHRRFVDALTELGGAQVATPKQIRELMRVDGLTNDEVKSHLQKYRLH 300
                      79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.355242302IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-29243303IPR009057Homeodomain-like
SuperFamilySSF466898.51E-17243303IPR009057Homeodomain-like
TIGRFAMsTIGR015578.7E-26245300IPR006447Myb domain, plants
PfamPF002498.3E-7247298IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MGLEISLIND PSERSRRFDE FLKRLEDEMK KIKVFKRELP LSMLLLEEAI LHLKQESKQY  60
KTRITHQLVS EEFIPLNKDS IRGENTQSNK TSDEDSGSEM KNWMRSFQLW VDDQPSKSSV  120
TTHMSCNQNQ NNNLSAESKM VDEKRNPIVG SDVFDPSKIR TESKGFVPLV HCYPTTIPDM  180
SRKVENKEDG KATGLSLLVS GMIKHPEENS IFRGFDPKLG GAQNSSSPSA ASGGRSSQQQ  240
ISARKQRRCW SPELHRRFVD ALTELGGAQV ATPKQIRELM RVDGLTNDEV KSHLQKYRLH  300
TRRVPNDSGK KNGQALSNSW SAQDQYSESL IPSNSPSSSP EGPLQFPGLT GGTSTTGGDS  360
MEDDDDEKSE IFSYVHRSGN DDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-13245298255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-13245298255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A8e-14245298154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-14245298154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-14245298154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-14245298154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-13245298255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-13245298255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-13245298255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-13245298255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-13245298255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-13245298255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691017.11e-162PREDICTED: myb family transcription factor EFM
TrEMBLA0A0K9RTL51e-154A0A0K9RTL5_SPIOL; Uncharacterized protein
STRINGXP_010691017.11e-161(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-42G2-like family protein