PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003973-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 265aa    MW: 29695.5 Da    PI: 10.1936
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003973-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2673.7e-21150200155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y+GVr ++ +grW AeIrd       r r++lg+f+t+eeAa+a++aa+++l+g
  AHYPO_003973-RA 150 KKYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTPEEAARAYDAAARRLRG 200
                      59********.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.29E-19150207No hitNo description
PfamPF008475.9E-15151200IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-22151209IPR016177DNA-binding domain
SMARTSM003805.5E-33151214IPR001471AP2/ERF domain
PROSITE profilePS5103222.655151208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-29151208IPR001471AP2/ERF domain
PRINTSPR003673.0E-10152163IPR001471AP2/ERF domain
PRINTSPR003673.0E-10174190IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MNDPTFDYIS PFFLKQKTFN SLETFPNLSA ISTFSQYDHI TYSSSSRNVS SSFPTTLERN  60
VEESETSPSP ILEGIAAVVG QHVLFGNTTP CKQNNKPHVS KLETITPKRF ETSTEVIIDH  120
TQHPTPNTKK KRFTKRNVKD SVSGVIEVEK KYRGVRKRPW GRWSAEIRDR IGRCRHWLGT  180
FDTPEEAARA YDAAARRLRG SKAKTNFHIP SVVPSVMTSP TSSCSSTSYE LNKNKGSYKK  240
KCEVVTCMSQ LVTNNNGINT IHGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-18150207159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021732134.14e-62ethylene-responsive transcription factor ERF084
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.13e-21ERF family protein