PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003821-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 510aa    MW: 56362.6 Da    PI: 8.7103
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003821-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-056789123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C+k F r  nL+ H r H
  AHYPO_003821-RA 67 FVCEICNKGFQRDQNLQLHRRGH 89
                     89*******************88 PP
2zf-C2H210.90.0014143163121
                      EEETTTTEEESSHHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                      +kC +C+k++  +s+ k H +
  AHYPO_003821-RA 143 WKCDKCSKRYAVQSDWKAHSK 163
                      58*****************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.43E-76689No hitNo description
Gene3DG3DSA:3.30.160.601.7E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0176789IPR015880Zinc finger, C2H2-like
PfamPF121718.1E-56789IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM00355210108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.7E-4131163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.43E-7138162No hitNo description
SMARTSM00355140143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MIKQQQVFIE ENMSNLTSAV SGEASVSSGN TRAEPNTSLY NHNHQQFHPD AEVIALSPKS  60
LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTN KEVKKKVYVC PEPSCVHHDP  120
SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA HSKNKYETEN KREGSKKRDS  180
FITHRAFCDA LAEETARAIT TNALLSNPIG PSTSHFINLP QQQNDPLHAF PLKREQHPQQ  240
NMMNLPPWLA CSPIDHNPQL PSPSSSSSMI FHPQDQMMQP QNQIQNPSNN NMGPTFSSGG  300
VGGLGGPYHT QSVASAAHMS ATALLQKAAQ MGATMSNNTA TPQPHHQHQH QSHVSDTNSN  360
TTTTAGLFGL NLSSRDHHQQ QQDQNQIMPT SMNHLPSPNP NPNPSPSPNP SSSFIHDMMI  420
NSMSSSYDHH HHEDAFGIGS MGTMMGKKDS SSLNNGSNQG NDGLTRDFLG LRPLSHSEIL  480
TIAGLGNCMN SNSTTSHHQQ DNGHKSWQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-19139197364Zinc finger protein JACKDAW
5b3h_F7e-19139197364Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685384.10.0PREDICTED: protein indeterminate-domain 7
TrEMBLA0A0K9QFX11e-178A0A0K9QFX1_SPIOL; Uncharacterized protein
STRINGXP_010685384.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.12e-90indeterminate(ID)-domain 2