PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_003772-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

FAR1

Protein Properties

Length: 438aa MW: 49907.4 Da PI: 7.731

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_003772-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85	1.2e-26	22	108	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+l+vk+++dgkw+v++++++HnHel p AHYPO_003772-RA 22 EFYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASLHVKRKEDGKWYVYNFVKDHNHELLP 108 6**************************************999877....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-24	22	108	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.507	192	228	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.2E-6	199	226	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.0E-7	203	230	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MASSNLEPRE DMEFDSHEAA YEFYKEYAKS VGFGTAKLSS RRSRASKEFI DAKFSCIRYG 60 NKQQSDDAIN PRPSPKIGCK ASLHVKRKED GKWYVYNFVK DHNHELLPAQ AHFFRSHRDL 120 DPLKNDVRLR KPPELKSPSP FEKQMSWVYT GEILKKFQVE VLGAAACHLK KEKEDATGIT 180 YTVKDFESNQ EFTVEWNQSS SEICCLCRLF EYHGFLCRHA IVVLQMSGVF NIPFKYVLQR 240 WTNAALSRHS ISGKLDEVQA KVRRYNGLCR RALILAEEGS LSIDSYNVAV SAMRDAFQRC 300 YDGNSSFEKD LRPNSCSIYS INCNGYDSQG SHLRLCDGEL DKGLSEISTV PMRPEFGKET 360 ISSNMNVNTR ENAILDQDIT AVVSEHGFTQ MEIPNTRPAL LHDMFPVPFH TSMSSMIRGT 420 APGQFQHDVW QHKHLQP*

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MASSNLEPRE DMEFDSHEAA YEFYKEYAKS VGFGTAKLSS RRSRASKEFI DAKFSCIRYG  60
NKQQSDDAIN PRPSPKIGCK ASLHVKRKED GKWYVYNFVK DHNHELLPAQ AHFFRSHRDL  120
DPLKNDVRLR KPPELKSPSP FEKQMSWVYT GEILKKFQVE VLGAAACHLK KEKEDATGIT  180
YTVKDFESNQ EFTVEWNQSS SEICCLCRLF EYHGFLCRHA IVVLQMSGVF NIPFKYVLQR  240
WTNAALSRHS ISGKLDEVQA KVRRYNGLCR RALILAEEGS LSIDSYNVAV SAMRDAFQRC  300
YDGNSSFEKD LRPNSCSIYS INCNGYDSQG SHLRLCDGEL DKGLSEISTV PMRPEFGKET  360
ISSNMNVNTR ENAILDQDIT AVVSEHGFTQ MEIPNTRPAL LHDMFPVPFH TSMSSMIRGT  420
APGQFQHDVW QHKHLQP*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021863920.1	1e-156	protein FAR1-RELATED SEQUENCE 4-like isoform X1
Refseq	XP_021863921.1	1e-156	protein FAR1-RELATED SEQUENCE 4-like isoform X2
Swissprot	Q6NQJ7	2e-71	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A0K9RX01	1e-155	A0A0K9RX01_SPIOL; Uncharacterized protein
STRING	XP_010686028.1	1e-147	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	6e-74	FAR1-related sequence 4

Link Out ? help Back to Top
Phytozome	AHYPO_003772-RA

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]