PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003737-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 893aa    MW: 98647 Da    PI: 7.0001
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003737-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.91e-14329411180
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfv 80 
                      f+k+l+ sd+++ grlvlpk +ae++   +++ e+  l+++d +g++W++++++  +++s++yvl+ G     ++ +L++gD+ 
  AHYPO_003737-RA 329 FEKILSASDASRIGRLVLPKACAEAYfpTINQSEGLPLKIRDIKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTA 411
                      99**************************666667778***************9989999999***9.***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.2E-23325410IPR015300DNA-binding pseudobarrel domain
CDDcd100173.98E-18327410No hitNo description
SuperFamilySSF1019362.22E-15327410IPR015300DNA-binding pseudobarrel domain
PfamPF023627.8E-12329410IPR003340B3 DNA binding domain
SMARTSM010194.3E-10329421IPR003340B3 DNA binding domain
PROSITE profilePS5105014.054576626IPR011124Zinc finger, CW-type
PfamPF074964.0E-11581623IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 893 aa     Download sequence    Send to blast
MGSKICMNTS CGAKTAVQWK KAWELKSGEI ADLCFRCGSA YENQVYCDTF HAEETGWREC  60
SLCNKRLHCG CSASARLIEI QDFGGIWCVS CAKSAGCHST KRNGICSEPQ TSVKYSNASD  120
LQNTLLSNKQ ETNVISNGNL LSLNNINVPN VPRYLPQSPP DLVNGSFEQI KSENPNSSVG  180
VGGLGFSNLS RALNGPALYA QQNVDMAKTG VKDVKELQMP SLGISLRSPS DTPNFGLTFS  240
NGVEEGENGR PSLFQPGQRP RQILPKTPKH NLAKAPDVNK SSFSPMRVGR PPTEGRMKHQ  300
LLPRYWPRIT DEELQKLSGD LNSKIEPLFE KILSASDASR IGRLVLPKAC AEAYFPTINQ  360
SEGLPLKIRD IKGNEWTFQF RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT ASNTLEAQDP  420
QTSTANPNGT TSGENSYPDA AEILSGRSDH CDLLPMGSAG DNQPSVIPEQ SNVINGNTSW  480
GKSEKLKGKV SEDVLEQPKM SSDKKRMRNL SSKSKRLLMH NDDALDLKVS WEETQDLLRP  540
PPSVEPNIVV IEDFEFEEYN EPPVIGKRTF FSIRPSGGQD QWAQCDDCSK WRKLPITVLL  600
PPKWTCSENT WDSSRSSCSS AEEMIPKDLD NSFRGSKDSK KRKVAESPGQ RCEPSGLDAL  660
ATAATLGDHE EPSAGATTRH PRHRPGCTCI VCIQPPSGKG KHKPSCVCNV CLTVKRRFKT  720
LMMRKKKRQC EREAEMAQRK NNENQIEEPQ LTKKSPTNEV ISDKDHVENE VHQEKALPDG  780
ETSSKSHIDL NCHPIREEDG AIETQPSMSI MTLARASTSP LDVYMKSNGL ANLLGKQPMD  840
TDSSILQKST DYVDRSMTNE ERHAPVSKEQ ELCKADGEDS EKAPTLDKQL QP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-543074202113B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1714725KRRFKTLMMRKK
2714727KRRFKTLMMRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685978.10.0PREDICTED: B3 domain-containing transcription repressor VAL1
TrEMBLA0A0K9Q9G10.0A0A0K9Q9G1_SPIOL; Uncharacterized protein
STRINGXP_010685978.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-163HSI2-like 1