PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_003736-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bZIP

Protein Properties

Length: 370aa MW: 40440.6 Da PI: 6.7627

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_003736-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.9	6e-10	175	226	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 kr++r NR +A rs +RK ++ eLe+kv++L++e ++L +l ++ AHYPO_003736-RA 175 KRAKRILANRQSAARSKERKARYMLELERKVQTLQTEATTLSAQLTLYQRDT 226 9*****************************************9998877655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.2E-16	171	235	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.415	173	236	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.2E-8	175	229	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.6E-8	175	229	No hit	No description
SuperFamily	SSF57959	3.31E-10	175	226	No hit	No description
CDD	cd14703	3.19E-24	176	225	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MDIKSDPSTS SPNPHLINGN PSKPPNNGTI PNSTLFSSPN PFRGFHHRRA HSEVSFRIPD 60 DMDLSSDPFT GSSTEEIGSE DDLFNTYIDV DKLGASGSGP HVGLGLSVDI NNASNNNNDN 120 SNNNAAGRPR HRHSNSVDAT TSSGSGNANV FGEIMDAKKA MPPDKLAELW TIDPKRAKRI 180 LANRQSAARS KERKARYMLE LERKVQTLQT EATTLSAQLT LYQRDTTGLA TENTELKLRL 240 QAMEQQAQLR DALNEALKQE VERLRVATGE MMSPSESFNL GMHGMQYNPS AFYSLPQQHV 300 PQGQQNMQLP SYHQSQGNLH HKPNSQNPSE FMPNDHLGRL QGLDLGSRGS HLVKSEGATM 360 SASESSSTL*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MDIKSDPSTS SPNPHLINGN PSKPPNNGTI PNSTLFSSPN PFRGFHHRRA HSEVSFRIPD  60
DMDLSSDPFT GSSTEEIGSE DDLFNTYIDV DKLGASGSGP HVGLGLSVDI NNASNNNNDN  120
SNNNAAGRPR HRHSNSVDAT TSSGSGNANV FGEIMDAKKA MPPDKLAELW TIDPKRAKRI  180
LANRQSAARS KERKARYMLE LERKVQTLQT EATTLSAQLT LYQRDTTGLA TENTELKLRL  240
QAMEQQAQLR DALNEALKQE VERLRVATGE MMSPSESFNL GMHGMQYNPS AFYSLPQQHV  300
PQGQQNMQLP SYHQSQGNLH HKPNSQNPSE FMPNDHLGRL QGLDLGSRGS HLVKSEGATM  360
SASESSSTL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021716329.1	0.0	transcription factor RF2b-like
Swissprot	O22873	1e-104	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A0K9QEM3	0.0	A0A0K9QEM3_SPIOL; Uncharacterized protein
STRING	XP_010685977.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-106	bZIP family protein

Link Out ? help Back to Top
Phytozome	AHYPO_003736-RA

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]