PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003695-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family M-type_MADS
Protein Properties Length: 327aa    MW: 37639.6 Da    PI: 6.2572
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003695-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.91.1e-171048240
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                     +i  +  r++t++kR++g+lKKA+E S+LC++ v++ii+
  AHYPO_003695-RA 10 FITKEKTRNTTYIKRKKGLLKKAQEFSILCNVPVCIIIY 48
                     7888999*******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-15160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-17152IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.012148IPR002100Transcription factor, MADS-box
CDDcd002664.40E-212103No hitNo description
PRINTSPR004045.3E-9323IPR002100Transcription factor, MADS-box
PfamPF003199.2E-161049IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGRAKIAMEF ITKEKTRNTT YIKRKKGLLK KAQEFSILCN VPVCIIIYPY KEGQVSLEAE  60
VYAFKGDSDP NDLGKSRDSE MVKGIIDRFL RVPLEERNKR SLNLYDMFDG WKRKASQDLI  120
KIKRKNALNK YPNWDSSLDG FSLDQFIEFL GYLDHKIEVV KQRIDMINGT NHDYSDLNQA  180
EALVLPTYQE TPTNSTLMVP NDQIFCDDHH QIVGYPNIVE GYNPFSWFNY PMISDNNGLN  240
QDQYCPQLVT YNPNVFTNQV DDENWYTNRN VMGGMSYDQG SGFGESIGAT STYGAVLPMQ  300
SNVPMQFPMV HNVPLQRHGQ YQMFYK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11225KEKTRNTTYIKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021751881.18e-98agamous-like MADS-box protein AGL11
TrEMBLA0A0J8CM582e-95A0A0J8CM58_BETVU; Uncharacterized protein
STRINGXP_010676053.11e-93(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.18e-19M-type_MADS family protein