PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003576-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 735aa    MW: 82828.2 Da    PI: 8.6014
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003576-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.28.8e-06178200326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      +++Cr+f+r G+C++G+ Ck  H+
  AHYPO_003576-RA 178 RSPCRDFLR-GQCNFGSCCKSWHP 200
                      579******.*********97776 PP
2zf-CCCH17.38.4e-06258280326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      +e C  f + G C +G++C++ Hg
  AHYPO_003576-RA 258 REVCLQFTK-GRCIFGASCRYLHG 280
                      688999999.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.713175202IPR000571Zinc finger, CCCH-type
SMARTSM003560.79176201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.075256282IPR000571Zinc finger, CCCH-type
SMARTSM003560.0023256281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4259280IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.40.50.10001.1E-14506703IPR023214HAD-like domain
SuperFamilySSF567849.89E-23510703IPR023214HAD-like domain
PROSITE profilePS5096927.044511692IPR004274FCP1 homology domain
SMARTSM005771.8E-6514677IPR004274FCP1 homology domain
PfamPF030317.0E-23516699IPR004274FCP1 homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MEQNVTKRSL FQQQRFGTLN GGGAHVEVGP LEKGCPRSWT GSDALRQEKA QIPITRDNFR  60
GTCARGASRK YQHSRSVEDG GARFYQNGCG RVAAVPNLGN SQYGENQDMD FTTGLSSDGF  120
RSSSPHCKFQ RGLYLQPESI RYDRPTYDSR GHQVDGAVGV SGFGEGMRNY TSGQNRIRSP  180
CRDFLRGQCN FGSCCKSWHP VNSYVGSMYD FSSQHHQRVA DPLNNPGCGE GHRDVTLRTS  240
QGHYEPNMHN HLQPVAVREV CLQFTKGRCI FGASCRYLHG YPVYASSDRI NKPTEAAGDY  300
RNSAFVNQYT NTVITREDHG VKNSDMLSGE SKNTVSCDKE SKGLSLNNAI ELDILDQKAD  360
LTKLETDGNA NVTSYLVCKS DEHAAELMPV INTYCSKKKR KRGLGVGYHE DDMKECSNAP  420
KHKTPKSLSN SNILSVSCIP SDIKTNASTN NDLENMLMYD HPTNPLENGM TNRICKIVES  480
AQATTEDDTS LGNIDNHSLQ ALPVLPKPIL PFRRRKLLVL DLNGILVDIA AVCHDKYKPD  540
IMVASKGVFK RPFCDDFLQF CFEKFDVGIW SSRTKKNLTS VVNFLLKDEQ KRLRFCWDHS  600
HCTGTRYKTL EDETKPLVLK ELKYLWYHAR KDLPWKKGFY NETNTVLLDD SPYKALRNPL  660
YTAIFPYPYS FENAGDKSLG PGGDLRTYLE RLAEAEDVRK FIQENPFGQK PITKEHKFWY  720
FYAKIVGASN KRKC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q8W91e-104A0A0K9Q8W9_SPIOL; Uncharacterized protein