PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_003445-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

GRAS

Protein Properties

Length: 387aa MW: 42498.7 Da PI: 6.3695

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_003445-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	349.8	4.2e-107	17	380	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfsh 95 +lLl+cA +s+g+l++a lL ++ e +sp g+p R+aayf+ AL+++++ s ++ ++ + s ++ ++ + l+ ++ ++P++kfsh AHYPO_003445-RA 17 SLLLKCASLISTGNLQAAGDLLPEIFEFSSPFGSPADRVAAYFAHALRSKILFyFLSPPSNPIRNLTLS-SQLKNFHSGLQSYNSLTPFVKFSH 109 79***********************************************984455555555555554.456666677788******** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak..rle 187 +taNqaI ea++g+++vH+iD+di+qGlQWp L++ LasRp++ s+R+Tg+g+ s+e l++tg rLa+fA++lg+pf+fn+l k +++ AHYPO_003445-RA 110 FTANQAIFEAINGHDHVHVIDLDIMQGLQWPGLFHILASRPRKLGSVRVTGFGP----SSELLNQTGYRLAEFAASLGLPFQFNALEGKigEMS 199 **************************************************....9**********************955444888 PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklprese 280 + el++L vk+gE+++V+++ h l+d s+s++ +Lk++ ++Pk+v++veq+++ +++sFlerf+eal+yysalfd+l ++l++es AHYPO_003445-RA 200 ASELSRLGVKSGEMTVVHCMN--HCLYDISGSISG----TLKVLSAVRPKLVTIVEQDLEAcQTTSFLERFVEALHYYSALFDALGEGLGKESV 287 889999**********9..888888999998....***************9999**************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +r++vE++l+g ei+n++a ++ + +l +W + l ++GF+p +ls + a+qa+lll +++++gy++ ee+g+l lgWkd pL++++aW+ AHYPO_003445-RA 288 QRHMVEQQLFGTEIRNILAFDERI-NGGDDRLCQWAHELVRVGFEPFSLSGSPAAQANLLLGMFPWKGYTLMEENGCLRLGWKDLPLLTATAWQ 380 ****************9998.777788************************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	53.078	1	360	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-104	17	380	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048366	Biological Process	leaf development
GO:0090610	Biological Process	bundle sheath cell fate specification
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MLGVTSPQSN SSLYFLSLLL KCASLISTGN LQAAGDLLPE IFEFSSPFGS PADRVAAYFA 60 HALRSKILFY FLSPPSNPIR NLTLSSQLKN FHSGLQSYNS LTPFVKFSHF TANQAIFEAI 120 NGHDHVHVID LDIMQGLQWP GLFHILASRP RKLGSVRVTG FGPSSELLNQ TGYRLAEFAA 180 SLGLPFQFNA LEGKIGEMSA SELSRLGVKS GEMTVVHCMN HCLYDISGSI SGTLKVLSAV 240 RPKLVTIVEQ DLEACQTTSF LERFVEALHY YSALFDALGE GLGKESVQRH MVEQQLFGTE 300 IRNILAFDER INGGDDRLCQ WAHELVRVGF EPFSLSGSPA AQANLLLGMF PWKGYTLMEE 360 NGCLRLGWKD LPLLTATAWQ PCEIGN*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MLGVTSPQSN SSLYFLSLLL KCASLISTGN LQAAGDLLPE IFEFSSPFGS PADRVAAYFA  60
HALRSKILFY FLSPPSNPIR NLTLSSQLKN FHSGLQSYNS LTPFVKFSHF TANQAIFEAI  120
NGHDHVHVID LDIMQGLQWP GLFHILASRP RKLGSVRVTG FGPSSELLNQ TGYRLAEFAA  180
SLGLPFQFNA LEGKIGEMSA SELSRLGVKS GEMTVVHCMN HCLYDISGSI SGTLKVLSAV  240
RPKLVTIVEQ DLEACQTTSF LERFVEALHY YSALFDALGE GLGKESVQRH MVEQQLFGTE  300
IRNILAFDER INGGDDRLCQ WAHELVRVGF EPFSLSGSPA AQANLLLGMF PWKGYTLMEE  360
NGCLRLGWKD LPLLTATAWQ PCEIGN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-121	21	381	24	379	Protein SCARECROW
5b3h_D	1e-121	21	381	24	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021855794.1	0.0	scarecrow-like protein 23
Swissprot	Q9FHZ1	1e-148	SCL23_ARATH; Scarecrow-like protein 23
TrEMBL	A0A0K9R686	0.0	A0A0K9R686_SPIOL; Uncharacterized protein
STRING	XP_010669360.1	1e-178	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41920.1	1e-144	GRAS family protein

Link Out ? help Back to Top
Phytozome	AHYPO_003445-RA

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yoon EK, et al. Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots. Mol Plant, 2016. 9(8): p. 1197-1209 [PMID:27353361]