PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_003325-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | ARF | ||||||||
Protein Properties | Length: 815aa MW: 90510.7 Da PI: 6.4353 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74 | 1.8e-23 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++ AHYPO_003325-RA 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELVARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 217 99*****************************8544444..48************************************************..88 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++++r+ AHYPO_003325-RA 218 EKNQLFLGIRRA 229 89999****997 PP | |||||||
2 | Auxin_resp | 119.9 | 1.9e-39 | 254 | 337 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWp S+Wrs+k AHYPO_003325-RA 254 AAHAANTNSCFTIFYNPRASPSEFVIPLSKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPSSHWRSVK 337 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.19E-48 | 115 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-41 | 121 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.38E-21 | 127 | 223 | No hit | No description |
Pfam | PF02362 | 1.0E-21 | 128 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.1E-24 | 128 | 230 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.365 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.9E-34 | 254 | 337 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 2.22E-7 | 711 | 790 | No hit | No description |
Pfam | PF02309 | 1.9E-7 | 714 | 803 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 23.464 | 717 | 801 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 815 aa Download sequence Send to blast |
MKLSASGLVQ PGNEGGEKKC LNSELWHACA GPLVCLPTAG SRVVYFPQGH SEQVAATTNR 60 DVDGQIPNYP SLPPQLICQL HNVTMHADIE TDEVYAQMTL QPLSPQEQKD IYLPADFGIP 120 SRQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QQPPAQELVA RDLHDVEWKF 180 RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLFLGIRRAT RPQTVMPSSV 240 LSSDSMHIGL LAAAAHAANT NSCFTIFYNP RASPSEFVIP LSKYVKAVYH TRVSVGMRFR 300 MLFETEESSV RRYMGTITGI SDLDPVRWPS SHWRSVKVGW DESTAGERQP RVSLWEIEPL 360 TTFPMYPSLF PLRLKRPWHA GTSSLSDNID DTANSLMWLR GQGGEQGLNS MNFQSLGMFP 420 WMQSRVDSLL PLGNQNQQYQ ALLSPTFQNL RGGDMLNPQM MQFQQPIQYL QQSTSQIPML 480 QQQQQQQLIH SSLTQQMLQG QSQVSKDTLP QRVLSTEYFK HSGGLSNQQL CGSEAFSLPN 540 NEMQSRQQLT MSSALGKADT SSGNAEITNS THSPVQNILS SARTEGISNF SDISHVNQTM 600 LNEQSSQHPL VSLNSFTPIN AFGNSVSLPP YPGKDTSLET GNCSLDVQNH NVFGANLDSS 660 GLVLPMTMPT TYRTSSNDTE LCSLPSGASG YHNMYGCNSN SPELHSEGQG DLPNPTRTFV 720 KVYKSGSVGR SLDISRFSSY HELREELGQM FGIEGKLDDP LRSGWQLVFV DRENDVLLLG 780 DDPWEAFVYN VSYIKILSPE DVQKLGKLGT ETYS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-166 | 15 | 358 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021742018.1 | 0.0 | auxin response factor 8-like isoform X2 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A0K9RN02 | 0.0 | A0A0K9RN02_SPIOL; Auxin response factor | ||||
STRING | XP_010675199.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_003325-RA |