PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003237-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Trihelix
Protein Properties Length: 634aa    MW: 73386.7 Da    PI: 6.037
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003237-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix316.4e-10104184286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevsk.kmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      W+++e laL ++r++m+++   +      We vs+ k++e gf+r++++Ckek+e+  +   +i+++++++ +++ ++ ++f +le
  AHYPO_003237-RA 104 WSNDELLALFRLRSSMDNTWFPD----FIWENVSSrKLAELGFKRTAEKCKEKFEEEFNNNININNNNNNN-NNNNNNNRLFGELE 184
                      ******************98877....9*****85267*****************9999888898888886.55556888998887 PP
2trihelix994e-31510600186
         trihelix   1 rWtkqevlaLiearremeerlr......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW+++evlaLi++r ++ ++ +      ++++k+plWe++s+km+e g++r++k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  AHYPO_003237-RA 510 RWPRDEVLALINIRCSLFNNGGdvnndkESCSKGPLWERISQKMMELGYNRNAKRCKEKWENINKYFRKTKDLNKKR-SIDSRTCPYFHQLS 600
                      8**************9998888333333468*********************************************8.78889*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.8100159IPR001005SANT/Myb domain
PROSITE profilePS500905.912103157IPR017877Myb-like domain
SMARTSM007171.8507575IPR001005SANT/Myb domain
CDDcd122033.67E-24509580No hitNo description
PfamPF138372.5E-19509601No hitNo description
PROSITE profilePS500906.458510573IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MFDGMGDQFY QFLASTTTNS NTNNSTNNAN NSSTSSLNLP LSFSLHHHHH HASFPSYPPT  60
FDSSYHLLHH PSQFLHRNEV KGEILNLHDS CLNPRSLLLH EIPWSNDELL ALFRLRSSMD  120
NTWFPDFIWE NVSSRKLAEL GFKRTAEKCK EKFEEEFNNN ININNNNNNN NNNNNNNRLF  180
GELEQLCNNN NNNNNNNNNN TNINHDDHLP DDHHDHPQTS LSQRGEFPDE DEDENNVHDD  240
HDWDDEENEE KRKKEKLLED NNEEKEVGNT RKVENMNHHV EDEQSMNDDS EKTEENTKKM  300
MRKRKRTQKK FEMLKGFCEK IVNKMMDQQE QLHWKILEDM VKRDEEKIAK EEAWKQQEIE  360
RLQKELEIRA HEQAIVGDRQ AKILDCLNKF NASSSNIMEN SWCFKETIEN ISKVSNVITL  420
SNSLILSTNY QDNPIRVQLP PSSSCITHDK TSSLNDRLPI SDQVVGQNPN NPPSLVDSYK  480
LSSLDHTSSN ATDVTDRQKV IGVKDDTGRR WPRDEVLALI NIRCSLFNNG GDVNNDKESC  540
SKGPLWERIS QKMMELGYNR NAKRCKEKWE NINKYFRKTK DLNKKRSIDS RTCPYFHQLS  600
HLYSQGTLVG STDRQVSLAG SPENGKSNAF SGG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675079.10.0PREDICTED: trihelix transcription factor GTL2
TrEMBLA0A0K9QL430.0A0A0K9QL43_SPIOL; Uncharacterized protein
STRINGXP_010675079.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.13e-72Trihelix family protein