PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003194-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ZF-HD
Protein Properties Length: 267aa    MW: 30124.2 Da    PI: 9.9173
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003194-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer96.22.6e-3059114359
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                       +r++eC++NhAa+lG h+vDGCgEfmps ge+gt  alkCaAC+CHRnFHR+ ve+
  AHYPO_003194-RA  59 MIRFRECQRNHAAHLGNHVVDGCGEFMPS-GEDGTRLALKCAACDCHRNFHRQVVEN 114
                      689*************************9.999*******************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-1954118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.6E-2860112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.1E-2661110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.64262111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.23E-18195262IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-28199263IPR009057Homeodomain-like
TIGRFAMsTIGR015655.3E-29201258IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEVKKPNKEI PIHLNNSFIY KNTLSPPSPP PPTSQKKKTL TLDPSHPTSD PDPNPNPKMI  60
RFRECQRNHA AHLGNHVVDG CGEFMPSGED GTRLALKCAA CDCHRNFHRQ VVENDTTTSM  120
AATLLQIRPG APTPTTTNCY ISFNKYHKHN NNLTPVHNSH PRAPVMMAFG GGGIAAESSS  180
DDLNAYRSGN LEFVEQYGVS KKRFRTKFSQ EQKDKMMEYA EKLGWKMQKQ NEVEVQRFCS  240
EVGVKRQVFK VWMHNNKQAM KKKQST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-222022571873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021718020.11e-122zinc-finger homeodomain protein 6-like
SwissprotQ9ZPW78e-64ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A2G2XGK94e-75A0A2G2XGK9_CAPBA; Zinc-finger homeodomain protein 6
STRINGXP_010679737.11e-106(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.11e-65homeobox protein 24