PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_003148-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 96aa MW: 10930.6 Da PI: 10.2578 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.5 | 1.1e-25 | 14 | 63 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklye 48 krien++ rqvtfskRrngi+KKA+ELSvLCda+v++ii+s+ t ++ye AHYPO_003148-RA 14 KRIENTTSRQVTFSKRRNGIIKKAQELSVLCDAKVSIIIISNssTKRVYE 63 79**************************************8611455665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.7E-32 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.301 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.1E-30 | 7 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-24 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-22 | 15 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-24 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF03628 | 2.9E-4 | 36 | 85 | IPR005309 | PapG, chaperone-binding |
PRINTS | PR00404 | 4.5E-24 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
MSEAKMGRGK IEIKRIENTT SRQVTFSKRR NGIIKKAQEL SVLCDAKVSI IIISNSSTKR 60 VYEHTTLGVS LKEIYDEYQR AEGIDLWHKQ NQVFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-14 | 6 | 78 | 1 | 72 | MEF2 CHIMERA |
6byy_B | 1e-14 | 6 | 78 | 1 | 72 | MEF2 CHIMERA |
6byy_C | 1e-14 | 6 | 78 | 1 | 72 | MEF2 CHIMERA |
6byy_D | 1e-14 | 6 | 78 | 1 | 72 | MEF2 CHIMERA |
6bz1_A | 1e-14 | 6 | 78 | 1 | 72 | MEF2 CHIMERA |
6bz1_B | 1e-14 | 6 | 78 | 1 | 72 | MEF2 CHIMERA |
6bz1_C | 1e-14 | 6 | 78 | 1 | 72 | MEF2 CHIMERA |
6bz1_D | 1e-14 | 6 | 78 | 1 | 72 | MEF2 CHIMERA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021718109.1 | 6e-42 | LOW QUALITY PROTEIN: MADS-box protein CMB2-like | ||||
Swissprot | Q42498 | 6e-37 | CMB2_DIACA; MADS-box protein CMB2 | ||||
TrEMBL | E0D3G4 | 3e-35 | E0D3G4_SILLB; Flower buds-specific protein SlAP3Y | ||||
TrEMBL | E2J8W7 | 3e-35 | E2J8W7_SILLA; Flower buds specific protein AP3Y | ||||
TrEMBL | Q7X9P0 | 3e-35 | Q7X9P0_SILDC; Flower buds-specific protein SiAP3Y | ||||
TrEMBL | Q7X9P4 | 3e-35 | Q7X9P4_SILLA; Flower buds-specific protein SlAP3Y | ||||
STRING | XP_010679828.1 | 3e-35 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 1e-28 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_003148-RA |