PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_003133-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | DBB | ||||||||
Protein Properties | Length: 190aa MW: 21533.6 Da PI: 8.366 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.5 | 8.4e-06 | 27 | 57 | 4 | 34 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ +e + +fC ++ lC +C + H AHYPO_003133-RA 27 TVCDVCETPVAVFFCPADEAALCLSCDHKVH 57 68*************************9988 PP | |||||||
2 | zf-B_box | 25.5 | 2.7e-08 | 79 | 115 | 5 | 37 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg....H 37 +C+ +e+ ++ ++Ce +++ lC +C + H g H AHYPO_003133-RA 79 RCDICENAPAFFYCEIDGTSLCLQCDMRVHVGgkrtH 115 8**************************9996555556 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 4.0E-7 | 24 | 71 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.741 | 24 | 71 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.72E-5 | 27 | 71 | No hit | No description |
SMART | SM00336 | 2.1E-11 | 75 | 120 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.001 | 75 | 120 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.5E-6 | 78 | 115 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.95E-7 | 79 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MRRNQMNDGE ELQIRGKKFR FIRQMRTVCD VCETPVAVFF CPADEAALCL SCDHKVHTCN 60 RLANRHVRLR LSAPKPFSRC DICENAPAFF YCEIDGTSLC LQCDMRVHVG GKRTHGRYLL 120 FRQQVELPAS ISMDHTPAGR ETNANVQSYR DPSSVLAPTP LGNEQTDRKM IDLNIKPHRL 180 HDSSSNSQQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022885681.1 | 4e-64 | B-box zinc finger protein 18-like isoform X3 | ||||
Swissprot | C0SVM5 | 2e-58 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A2P2LM04 | 2e-62 | A0A2P2LM04_RHIMU; B-box zinc finger protein 19-like | ||||
TrEMBL | A0A2P5DE44 | 3e-62 | A0A2P5DE44_PARAD; B-box-type zinc finger | ||||
TrEMBL | U5GHK5 | 2e-62 | U5GHK5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s11900.1 | 4e-63 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 7e-61 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_003133-RA |