PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003114-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NF-YA
Protein Properties Length: 338aa    MW: 36710.8 Da    PI: 10.1298
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003114-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.61.5e-31173229158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQy++Il+RRq Rak+e ekk+ +ksrkpylheSRh hAlrR+Rg gGrF
  AHYPO_003114-RA 173 EEPVYVNAKQYHGILRRRQIRAKAELEKKI-IKSRKPYLHESRHLHALRRARGAGGRF 229
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.8E-37171232IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.78172232IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.1E-27174229IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.5E-23175197IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860177197IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.5E-23206229IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MPTKAGNVED GFKSGGGSKP VNMLFGQPWW RSLSNNGISA TSTSNDSTTR TSSGEPVNGS  60
ALAGCFSVHI HGMQDTGASA CRQIQTALAP QSDRDNVHGQ QPSKQLTSSM PQNIADQSNS  120
QMELAGHSNV LTSYPYQDPT YGGAMAYAQL QQVNPQLYGL HQSRMPLPLA MEEEPVYVNA  180
KQYHGILRRR QIRAKAELEK KIIKSRKPYL HESRHLHALR RARGAGGRFL NTKKYNDNTA  240
DSSKTDGNLA TKLQICSASL GHSERKSSTC SASAGSWNHK EARGMMISDM HKAESHSSSG  300
TNRHGLSSTY RSFSGPNEER NNYDRGGMKL NGVVSVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-20173233262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021837732.11e-174nuclear transcription factor Y subunit A-1-like isoform X3
TrEMBLA0A0K9Q9441e-169A0A0K9Q944_SPIOL; Uncharacterized protein
STRINGXP_010695208.11e-170(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.41e-34nuclear factor Y, subunit A1