PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003076-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family CO-like
Protein Properties Length: 371aa    MW: 41071.9 Da    PI: 5.4487
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003076-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.89.5e-081757438
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     r+C+++++ + + +C+ ++ +lC +C + +H        H+
  AHYPO_003076-RA 17 RVCDTCQSAPCTVYCKADSAYLCTSCDTRIHAAnqlasrHE 57
                     79*****************************6566666776 PP
2zf-B_box30.95.7e-1059104342
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                       ++C+ +e+ ++ + C+ +   lC++C   +H+       H++vp+
  AHYPO_003076-RA  59 VWVCEACERAPAAFLCKADAASLCATCDADIHSAnplarrHQRVPI 104
                      689*****************************66899999**9997 PP
3CCT70.73.7e-24301344144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  AHYPO_003076-RA 301 REARVMRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 344
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.3811461IPR000315B-box-type zinc finger
SMARTSM003363.4E-111461IPR000315B-box-type zinc finger
PfamPF006436.9E-61758IPR000315B-box-type zinc finger
CDDcd000215.07E-81761No hitNo description
PROSITE profilePS5011911.34857104IPR000315B-box-type zinc finger
PfamPF006438.8E-858104IPR000315B-box-type zinc finger
CDDcd000211.61E-860104No hitNo description
SMARTSM003361.8E-1162104IPR000315B-box-type zinc finger
PROSITE profilePS5101716.747301343IPR010402CCT domain
PfamPF062033.6E-18301343IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MMMKEEIPGG DTNSWARVCD TCQSAPCTVY CKADSAYLCT SCDTRIHAAN QLASRHERVW  60
VCEACERAPA AFLCKADAAS LCATCDADIH SANPLARRHQ RVPIMPVAGC VYGPPGGRMS  120
ADKFLGLTEG DEHTTDHEGD EDEAASWLLL NPGKNSENQI TNGYLSTGGG GVDEYLDLFE  180
YQTGGDNQFC EQYNPKREFS VPEKNCVEDS VVPVQCGEGK DHHQIQYQNF LFGMECETKS  240
GYNYNTSISH SVSVSSLDVG VVPESSMSDI SVSHQRASKG TIDLFSSPTM QVPTQLSPMD  300
REARVMRYRE KKKNRKFEKT IRYASRKAYA ETRPRIKGRF AKRTDVEAEM DQMFTNSLMA  360
DNGYSIVPSF *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694604.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2
SwissprotQ965021e-135COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLB3TZZ70.0B3TZZ7_BETVU; COL1
STRINGXP_010694604.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-124CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]