PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_002762-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | GRF | ||||||||
Protein Properties | Length: 246aa MW: 28306.5 Da PI: 7.9963 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 74.1 | 1.5e-23 | 80 | 122 | 1 | 43 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg+++s+k+ AHYPO_002762-RA 80 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNKSKKTT 122 79**************************************985 PP | |||||||
2 | QLQ | 47.5 | 5.6e-17 | 17 | 47 | 2 | 32 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 aFTa+Q+q+L++Q+l y+y++++ PvPp+L+ AHYPO_002762-RA 17 AFTASQWQELEQQLLTYRYIISGIPVPPQLI 47 8****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.8E-7 | 16 | 52 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 7.9E-12 | 17 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.022 | 17 | 52 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.591 | 80 | 124 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.0E-20 | 81 | 121 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MIRGRDYNKS RCDGFPAFTA SQWQELEQQL LTYRYIISGI PVPPQLISTV ITDPSAFFPL 60 QQSLPFGWGC FEMGYGRKID PEPGRCRRTD GKKWRCSKEA YPDSKYCERH MHRGKNKSKK 120 TTNSSSSSCS VSSSNDECAI NYHPLMPDKT QVQSFHTTNT TPSFYPFMST QSSSLSTHNC 180 TESTQHSSIA PHWLLDSQSY DQPKKQMRSL DLEADERIMS RFQEFGSNIY QENKEDDTNK 240 LYQNIP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021719953.1 | 3e-83 | growth-regulating factor 5-like | ||||
TrEMBL | A0A0K9RH58 | 1e-63 | A0A0K9RH58_SPIOL; Uncharacterized protein | ||||
STRING | XP_010685313.1 | 2e-77 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-45 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_002762-RA |