PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_002761-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | bHLH | ||||||||
Protein Properties | Length: 242aa MW: 27307 Da PI: 5.4408 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.7 | 0.00011 | 38 | 85 | 2 | 53 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 + ++ erEr R+++N f++L ++l + ++ + Ka++L ++++ +k+ AHYPO_002761-RA 38 KIMKAERERLKREQLNVLFNKLASVLELN----QENNGKASVLNETIRLMKE 85 66789*********************997....5778899999999998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 0.00106 | 34 | 86 | No hit | No description |
PROSITE profile | PS50888 | 11.147 | 36 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.05E-8 | 37 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-4 | 41 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MGSDVQDDQI LNEESDLAEV VEECSHPNKR KCVKVPKKIM KAERERLKRE QLNVLFNKLA 60 SVLELNQENN GKASVLNETI RLMKEMFCNI QSLRKENATL LSESQYMTAE KDELKEENTT 120 LEVQIKNMQN ELKERIGQSK PDLNVSPPEC WQTDMPSHFV EAHRPQMTPT DPSTQQSPIL 180 GPLYVIPFNP DLQAFQKIDA ASANSPITVS KPHARYPTPA DSWPLQLLPK QPKTAVTQSS 240 S* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021720461.1 | 1e-122 | transcription factor bHLH47-like | ||||
Swissprot | Q9SN74 | 7e-47 | BH047_ARATH; Transcription factor bHLH47 | ||||
TrEMBL | A0A0K9RH89 | 1e-112 | A0A0K9RH89_SPIOL; Uncharacterized protein | ||||
STRING | XP_010685315.1 | 1e-120 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 3e-49 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_002761-RA |