PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_002669-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | B3 | ||||||||
Protein Properties | Length: 230aa MW: 26029.1 Da PI: 9.3674 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.5 | 7.7e-16 | 134 | 220 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++ps+v+ +l lp +f+++ ++ke ++t+ de+g+++ v + rk++ +++GWk+F++ ++L +gD v+F+l +rs +v ++ AHYPO_002669-RA 134 PMLPSHVTGGFWLGLPSDFCRRS-LPKED-GMVTMVDEQGEEFPVVYLARKRG----MSGGWKGFAEFHELVDGDCVIFQLLSRSVL--KVYII 219 6899****************877.45544.49***************555555....89*********************9987776..88877 PP - CS B3 98 r 98 r AHYPO_002669-RA 220 R 220 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.67E-21 | 126 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-17 | 128 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.59E-21 | 129 | 220 | No hit | No description |
SMART | SM01019 | 3.4E-15 | 131 | 222 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.589 | 131 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.2E-14 | 135 | 221 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MVMAKTSYEK CREKRVEENQ KRLEELNLLH LSQAFNNLSP KSSPMKKVGK PRVVEKQMVA 60 VRRSPRVSNN PAPVYAEVTL PRFSSPRKSY GVSKARDFAN RVIATDEVRE YTIEKAEKLC 120 AKLDEEGFPT LIRPMLPSHV TGGFWLGLPS DFCRRSLPKE DGMVTMVDEQ GEEFPVVYLA 180 RKRGMSGGWK GFAEFHELVD GDCVIFQLLS RSVLKVYIIR GSDKEAELD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010667517.1 | 1e-135 | PREDICTED: B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A0J8B623 | 1e-133 | A0A0J8B623_BETVU; Uncharacterized protein | ||||
STRING | XP_010667517.1 | 1e-134 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 3e-65 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_002669-RA |