PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_002548-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | AP2 | ||||||||
Protein Properties | Length: 255aa MW: 28991.8 Da PI: 9.949 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.7 | 2.1e-16 | 13 | 62 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 y GVr+++ +gr++AeIrdp + k r +lg++ ta +Aa+a+++a+ +++g AHYPO_002548-RA 13 YIGVRRRP-WGRFAAEIRDP---NrKGYRLWLGTYNTAIDAARAYDRAAYEFRG 62 89******.**********9...6466************************998 PP | |||||||
2 | AP2 | 47.1 | 5.9e-15 | 126 | 172 | 6 | 55 |
AP2 6 VrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 Vr+++ +gr++AeIrdp + k r +lg++ ta +Aa+a+++a+ +++g AHYPO_002548-RA 126 VRRRP-WGRFAAEIRDP---NrKGYRLWLGTYNTAIDAARAYDRAAFEFRG 172 9*999.**********9...6466************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.26E-15 | 11 | 71 | No hit | No description |
SMART | SM00380 | 8.9E-30 | 12 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.024 | 12 | 70 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-29 | 12 | 71 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-21 | 13 | 72 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.2E-11 | 13 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 13 | 24 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 52 | 72 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.048 | 109 | 180 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-19 | 126 | 182 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-28 | 126 | 186 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-9 | 126 | 172 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.9E-28 | 126 | 181 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.20E-14 | 126 | 181 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MMSYVKNTPH ANYIGVRRRP WGRFAAEIRD PNRKGYRLWL GTYNTAIDAA RAYDRAAYEF 60 RGSKARINFP HEVGRWSIKS SSSTSSSSSF SSSNSSAKTV QVQHAGSKRH RNDEVEKDME 120 DDDYCVRRRP WGRFAAEIRD PNRKGYRLWL GTYNTAIDAA RAYDRAAFEF RGSKARLNFP 180 HEVGHWSSTS LSSSSSFSSL SSNSNSNSNS TPKIGQEQYS SSKRESNDDH VDIEHDDDCL 240 IIDDQPIIKR PRIF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-23 | 10 | 182 | 12 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021734838.1 | 3e-38 | ethylene-responsive transcription factor 5-like | ||||
Swissprot | Q9LW48 | 5e-28 | ERF5_NICSY; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A3Q7EKJ3 | 4e-54 | A0A3Q7EKJ3_SOLLC; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 4e-21 | ethylene responsive element binding factor 5 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_002548-RA |