PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_002523-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

SRS

Protein Properties

Length: 382aa MW: 38380.2 Da PI: 8.2941

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_002523-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	211	3e-65	147	318	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...........aeaaskrkrelkskkqsa 85 gt++CqdCGnqakkdC+h+RCRtCC+srgfdC+thvkstWvpaa+rrerq ++ ++ ++a+ +++ +k++r +s+++++ AHYPO_002523-RA 147 GGTTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPAARRRERQMMTVGGATASQAAVgggggggassgSTSGAKKPRLISSQNTAT 240 5789********************************************98887665555554478999999988788889999887777777 PP DUF702 86 lsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +s+t++s++ +++++etss lP +v+++avf+cv+v++++dge+e+aYq++v+igGhvfkG+LydqG+e+ AHYPO_002523-RA 241 TSHTSTSNT-PPRSFETSSshqdasfkesLPGQVKAPAVFKCVKVTAMEDGEDEFAYQAVVKIGGHVFKGFLYDQGAES 318 777776666.677888877799****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.6E-62	149	317	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.1E-26	151	193	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.9E-28	269	315	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MGMFVVAPAT SFQHDPSLIV DHHHHHHHHA GIGGINGGNN ATTALGVVVV VVVVVTAGPC 60 LNMGGGGGGG GGGGGDNGGI TLDGHDAFGS RNIHRTGAIN LWNTMTQQNQ MGGGSSTNYP 120 KKSINFDPGN PNFLPSPSTS AMGCGGGGTT TCQDCGNQAK KDCSHRRCRT CCRSRGFDCS 180 THVKSTWVPA ARRRERQMMT VGGATASQAA VGGGGGGGAS SGSTSGAKKP RLISSQNTAT 240 TSHTSTSNTP PRSFETSSSH QDASFKESLP GQVKAPAVFK CVKVTAMEDG EDEFAYQAVV 300 KIGGHVFKGF LYDQGAESRD HAGFPNMSEL NLGGGSGGGS SGGRNGGASS TSPLLDPSDV 360 YGASGSGGGL LGGSSYGNTI H*

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MGMFVVAPAT SFQHDPSLIV DHHHHHHHHA GIGGINGGNN ATTALGVVVV VVVVVTAGPC  60
LNMGGGGGGG GGGGGDNGGI TLDGHDAFGS RNIHRTGAIN LWNTMTQQNQ MGGGSSTNYP  120
KKSINFDPGN PNFLPSPSTS AMGCGGGGTT TCQDCGNQAK KDCSHRRCRT CCRSRGFDCS  180
THVKSTWVPA ARRRERQMMT VGGATASQAA VGGGGGGGAS SGSTSGAKKP RLISSQNTAT  240
TSHTSTSNTP PRSFETSSSH QDASFKESLP GQVKAPAVFK CVKVTAMEDG EDEFAYQAVV  300
KIGGHVFKGF LYDQGAESRD HAGFPNMSEL NLGGGSGGGS SGGRNGGASS TSPLLDPSDV  360
YGASGSGGGL LGGSSYGNTI H*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021772163.1	1e-126	protein LATERAL ROOT PRIMORDIUM 1-like
Refseq	XP_021772164.1	1e-126	protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	3e-79	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	V7BMQ0	1e-104	V7BMQ0_PHAVU; Uncharacterized protein
STRING	XP_010673751.1	1e-105	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	5e-46	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	AHYPO_002523-RA

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]