PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002518-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HB-other
Protein Properties Length: 500aa    MW: 56736.9 Da    PI: 6.9228
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002518-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.66e-202075257
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                     +kR+  t++ql++Le+++++++yp++++++eLA+k+gLte+qV+ WF+ rR k+k+
  AHYPO_002518-RA 20 KKRRFKTPSQLQALEDFYNEHKYPTESMKAELAEKIGLTEKQVSGWFCHRRLKDKR 75
                     8999**************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-20775IPR009057Homeodomain-like
SuperFamilySSF466892.22E-181578IPR009057Homeodomain-like
PROSITE profilePS5007117.1511676IPR001356Homeobox domain
SMARTSM003892.7E-201880IPR001356Homeobox domain
CDDcd000862.17E-172075No hitNo description
PfamPF000461.8E-172075IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MEDSGEIQCE ENKELPEKNK KRRFKTPSQL QALEDFYNEH KYPTESMKAE LAEKIGLTEK  60
QVSGWFCHRR LKDKRIINGE LNPPGRQDLS SGVIQDRGSG LKQDSCSSTK QGDYKLADIR  120
EVESRRFSQN GLPAVEINYE QRALDDGTEM DDTSSESNSA LQDNLHPYKR SPLVVEATDY  180
RAPNGFVAQN RRRVGPSGYL KIKGQTENVA ITAVKRQLGR HYREDGPPLG IEFDPLPPGA  240
FESPSKNANT DAYGVPEPVG PISHDMGFIH KRPGPSTIQN QDMYAAPMDY RSLQKSPDSF  300
SYRQPKQKPP FPNHGRSFPA QKSPLYVDSH SARESPDYGG GLNQNMLRKR DRMSMVSDSY  360
GGKITNEAED SWWNSYENEN LVAPRIRERS DSKTAGVPVR HKDIMIRDDR VPPTRLLKDE  420
ELYADKRAIG DHHDSVRFKM RPTNELKAGK KAREEFLQED YAIRSSQEPQ QWPRPIRRSN  480
ELPSSFSEDE TAETSSSMD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11924KKRRFK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673742.10.0PREDICTED: homeobox-DDT domain protein RLT1
TrEMBLA0A0K9RSS50.0A0A0K9RSS5_SPIOL; Uncharacterized protein
STRINGXP_010673742.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.13e-71HB-other family protein