PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_002518-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | HB-other | ||||||||
Protein Properties | Length: 500aa MW: 56736.9 Da PI: 6.9228 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.6 | 6e-20 | 20 | 75 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR+ t++ql++Le+++++++yp++++++eLA+k+gLte+qV+ WF+ rR k+k+ AHYPO_002518-RA 20 KKRRFKTPSQLQALEDFYNEHKYPTESMKAELAEKIGLTEKQVSGWFCHRRLKDKR 75 8999**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-20 | 7 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.22E-18 | 15 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.151 | 16 | 76 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.7E-20 | 18 | 80 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.17E-17 | 20 | 75 | No hit | No description |
Pfam | PF00046 | 1.8E-17 | 20 | 75 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MEDSGEIQCE ENKELPEKNK KRRFKTPSQL QALEDFYNEH KYPTESMKAE LAEKIGLTEK 60 QVSGWFCHRR LKDKRIINGE LNPPGRQDLS SGVIQDRGSG LKQDSCSSTK QGDYKLADIR 120 EVESRRFSQN GLPAVEINYE QRALDDGTEM DDTSSESNSA LQDNLHPYKR SPLVVEATDY 180 RAPNGFVAQN RRRVGPSGYL KIKGQTENVA ITAVKRQLGR HYREDGPPLG IEFDPLPPGA 240 FESPSKNANT DAYGVPEPVG PISHDMGFIH KRPGPSTIQN QDMYAAPMDY RSLQKSPDSF 300 SYRQPKQKPP FPNHGRSFPA QKSPLYVDSH SARESPDYGG GLNQNMLRKR DRMSMVSDSY 360 GGKITNEAED SWWNSYENEN LVAPRIRERS DSKTAGVPVR HKDIMIRDDR VPPTRLLKDE 420 ELYADKRAIG DHHDSVRFKM RPTNELKAGK KAREEFLQED YAIRSSQEPQ QWPRPIRRSN 480 ELPSSFSEDE TAETSSSMD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 19 | 24 | KKRRFK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010673742.1 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT1 | ||||
TrEMBL | A0A0K9RSS5 | 0.0 | A0A0K9RSS5_SPIOL; Uncharacterized protein | ||||
STRING | XP_010673742.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03250.1 | 3e-71 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_002518-RA |