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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | AHYPO_002434-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 180aa MW: 20545.7 Da PI: 6.563 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 16 | 3.4e-05 | 102 | 124 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C +Cgk+F + + ++H +++
AHYPO_002434-RA 102 FACRKCGKPFAVRGDWRTHEKNC 124
78*****************9987 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57667 | 2.14E-6 | 84 | 122 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 2.4E-5 | 88 | 122 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003676 | Molecular Function | nucleic acid binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 180 aa Download sequence Send to blast |
MEVDKILMRD TTNHVHGDDD HDGDDDEDDD DDGGMHMWGH GSQYRKGPES LRGTQPTAML 60 RLPCYCCAPG CRNNIDHPRA KPLKDFRTLQ THYKRKHGIK PFACRKCGKP FAVRGDWRTH 120 EKNCGKLWYC TCGSDFKHKR SLKDHIKSFG HGHAAYGIDS FDEEDEPNSE IEQDNESNQ* |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_021861865.1 | 1e-103 | zinc finger protein WIP2-like | ||||
| Swissprot | Q9SVY1 | 3e-95 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
| TrEMBL | A0A1R3I6D5 | 1e-101 | A0A1R3I6D5_9ROSI; Uncharacterized protein | ||||
| STRING | EOY32602 | 1e-100 | (Theobroma cacao) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G57670.1 | 4e-91 | C2H2 family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | AHYPO_002434-RA |
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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