PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002340-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HD-ZIP
Protein Properties Length: 737aa    MW: 80652.8 Da    PI: 5.4208
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002340-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.67.7e-171770352
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHH CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrR 52
                     k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR
  AHYPO_002340-RA 17 KYVRYTPEQVEALERLYHDCPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRR 70
                     5679*************************************************9 PP
2START161.18.2e-51742722205
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g+++l
  AHYPO_002340-RA  74 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWYRDCRAVDVLNVLPTAnsGTIEL 166
                      7899******************************************************.8888888888************************* PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvk 186
                       +++l+a+++l+p Rdf+ +Ry+  +++g++      v+ +++pp  +++vRae+lpSg+li+p+++g+s +++v+hvdl+ ++++++lr+l++
  AHYPO_002340-RA 167 LYMQLYAPTTLAPaRDFWLLRYTSVMEDGSL------VNGPSMPP-VQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHVDLEPWSVPEVLRPLYE 253
                      *************************999998......46799999.69********************************************** PP

                      HHHHHHHHHHHHHTXXXXX CS
            START 187 sglaegaktwvatlqrqce 205
                      s+++ ++kt++a+l+++++
  AHYPO_002340-RA 254 SSTVLAQKTTMAALRQLRQ 272
                      ***************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007113.5721270IPR001356Homeobox domain
SMARTSM003894.4E-111480IPR001356Homeobox domain
SuperFamilySSF466897.7E-141770IPR009057Homeodomain-like
CDDcd000861.43E-141770No hitNo description
PfamPF000462.0E-141870IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.0E-162070IPR009057Homeodomain-like
PROSITE profilePS5084820.60964269IPR002913START domain
CDDcd088755.30E-7370274No hitNo description
Gene3DG3DSA:3.30.530.209.3E-2171270IPR023393START-like domain
SMARTSM002347.8E-3473273IPR002913START domain
SuperFamilySSF559611.79E-3573275No hitNo description
PfamPF018522.2E-4874272IPR002913START domain
PfamPF086701.1E-35597735IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MMAMSCKDGK GVMDNGKYVR YTPEQVEALE RLYHDCPKPS SLRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR LLSIAEETLA EFLSKATGTA VEWVQMPGMK PGPDSIGIVA ISHGCTGVAA  120
RACGLVGLEP TRVAEILKDR PSWYRDCRAV DVLNVLPTAN SGTIELLYMQ LYAPTTLAPA  180
RDFWLLRYTS VMEDGSLVNG PSMPPVQNFV RAEMLPSGYL IRPCEGGGSI IHIVDHVDLE  240
PWSVPEVLRP LYESSTVLAQ KTTMAALRQL RQIAQEVSQP NVSNWGRRPA ALRSLGQRLS  300
RGFNEALNGF TDEGWSMIGN DGIDDVTVLV NSSPDKLMAL NLTYANGFPA VSNTVLCAKA  360
SMLLQNVPPA VLLRFLREHR SEWADNNIDA YLAAAAKISP CSLPGARIGG FGNQVILPLA  420
HTIEHEELLE VIKLEGVVSC PEDAMMPRDM FLLQICSGMD ENAVGTCAEL IFAPIDASFA  480
DDAPLLPSGF RIIPLDSVKE TSSPNRTLDL ASALEVGPSA NKSSSDNSAS GNNMRSVMTI  540
AFQFAFESHL QENVASMARQ YVRSIISSVQ RVALALSPHL GSQAGLRSPL GNPEAHTLAR  600
WICQSYRCVS CLLMPDTILA MNQLCARDTT TSTSLPAKAL PVFTFANQAG LDMLETTLVA  660
LQDITLEKIL DDHGRKTLVS EFPQILQQGF TCLQSGICLS SMGRPVSYER AVAWKVLNEE  720
ENAHCICFMF MNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2297111e-139KP229711.1 UNVERIFIED: Boehmeria nivea Homeobox-leucine zipper protein-like (HDZIP12) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691423.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15 isoform X1
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A0K9RV390.0A0A0K9RV39_SPIOL; Uncharacterized protein
STRINGXP_010691422.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]