PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002031-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GRAS
Protein Properties Length: 543aa    MW: 61405.3 Da    PI: 6.1356
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002031-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS399.24.3e-1221715422374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++ L+ cA+avs++d++ a+++++ l +++s +g+p+qRlaay++e+L+arl +s+ ++yk+l+++e +   s+e  +++++++e +P++kf++
  AHYPO_002031-RA 171 KDILILCAKAVSENDFSTAETVMNALGNMVSVTGTPIQRLAAYMLEGLKARLGSSGYTIYKKLRCEEPT---SAELRTYMHVLYEFCPYFKFAY 261
                      6789****************************************************************9...899999999************* PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv..pfefnvlvakr 185
                         N  Ileav +e+ +HiiDf+i++G+QW++Ll++L+++p+gpp +RiTgv++++s   +   le++++ L+  A++++v  pfefn+ +a +
  AHYPO_002031-RA 262 TSSNAIILEAVGNERSIHIIDFQIGMGTQWIPLLRSLSNQPGGPPFVRITGVDDSQSAyaRGGGLERVEKILSAEARSCRVpiPFEFNA-AAMS 354
                      ******************************************************999899999**************998622688888.7789 PP

             GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                        +++ e+L+v pgEal+Vn+ ++lh+++desvs+e++rd++L+lvkslsP+vv+vveqe+++n+++Fl+rf+e+l+yy+a+f+sl++ l+r++
  AHYPO_002031-RA 355 GCQVNRENLKVCPGEALVVNFPYMLHHMPDESVSTENHRDRLLRLVKSLSPRVVTVVEQESNTNTPPFLNRFIETLNYYTAMFESLDVALARND 448
                      999******************************************************************************************* PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      ++ri+ E ++l+r+ivn++ace +er+erhe ++kWr+rl++aGF+++pls ++ +++k l++ ++++ + ++ee+g+l+lgWkd  + s SaW
  AHYPO_002031-RA 449 KKRINAEMHCLARDIVNMIACEDSERVERHELFGKWRARLSMAGFTQLPLSISVKESVKDLMKGFHEN-HWLQEEKGALYLGWKDCWMASSSAW 541
                      ******************************************************************55.99*********************** PP

             GRAS 374 r 374
                      r
  AHYPO_002031-RA 542 R 542
                      8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.376144523IPR005202Transcription factor GRAS
PfamPF035141.5E-119171542IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MQTSQRNCIT SAVHGFHYQH APEMTPYISS HHQIFDNNMY PDIPPQDNQM SFETYDEPYF  60
TLDSAPTTSF YNTYDSPYAV STSSNRSPYS PQSYISDPHQ SSDNNYGSPM SGSSVIYDNT  120
QFRNQVLRDI ERSLMEPDSP HMQDGHYCSL NNNHGASPNK LIEILPKMEL KDILILCAKA  180
VSENDFSTAE TVMNALGNMV SVTGTPIQRL AAYMLEGLKA RLGSSGYTIY KKLRCEEPTS  240
AELRTYMHVL YEFCPYFKFA YTSSNAIILE AVGNERSIHI IDFQIGMGTQ WIPLLRSLSN  300
QPGGPPFVRI TGVDDSQSAY ARGGGLERVE KILSAEARSC RVPIPFEFNA AAMSGCQVNR  360
ENLKVCPGEA LVVNFPYMLH HMPDESVSTE NHRDRLLRLV KSLSPRVVTV VEQESNTNTP  420
PFLNRFIETL NYYTAMFESL DVALARNDKK RINAEMHCLA RDIVNMIACE DSERVERHEL  480
FGKWRARLSM AGFTQLPLSI SVKESVKDLM KGFHENHWLQ EEKGALYLGW KDCWMASSSA  540
WR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4917754126378Protein SCARECROW
5b3h_A2e-4917754125377Protein SCARECROW
5b3h_D2e-4917754125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021719817.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A0K9RLD00.0A0A0K9RLD0_SPIOL; Uncharacterized protein
STRINGXP_010686653.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13