PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_002014-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | G2-like | ||||||||
Protein Properties | Length: 299aa MW: 33575.8 Da PI: 6.3207 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108 | 4.9e-34 | 13 | 67 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl AHYPO_002014-RA 13 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 67 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.688 | 10 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.27E-18 | 11 | 67 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-32 | 11 | 68 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-25 | 13 | 68 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-9 | 15 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 7.5E-22 | 99 | 147 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MDPVSNNPNL SSKQRLRWTH ELHERFVDAV AQLGGPDRAT PKGVLRVMGV QGLTIYHVKS 60 HLQKYRLAKY LPDSSCEGKK TDWKESADLF YGPENSSGME ITEALKLQME VQKRLHEQLE 120 ACVQRQLQLR IEAQGKYLKK IIDEQQRLSK TIVEVPGSGD SKSGLLMSDK YLGPDSLKSD 180 PETPPPISES PLGKNNKEYA VAKTLSLDES FSSQHEPLTP DSTCHDAMTS ENYIEERSAK 240 KPCMTNNDAF SSQEILFTQQ ILESSTSQSL QQRHTLYMGE PFYPSALSLG KETREEKL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-23 | 13 | 70 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-23 | 13 | 70 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-23 | 13 | 70 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-23 | 13 | 70 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-23 | 13 | 70 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-23 | 13 | 70 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-23 | 13 | 70 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-23 | 13 | 70 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019106686.1 | 1e-159 | PREDICTED: myb family transcription factor PHL7 isoform X1 | ||||
Swissprot | Q9SJW0 | 1e-108 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A0K9R9S3 | 1e-125 | A0A0K9R9S3_SPIOL; Uncharacterized protein | ||||
STRING | XP_010686602.1 | 1e-158 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-110 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_002014-RA |