PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001925-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Trihelix
Protein Properties Length: 331aa    MW: 37976.9 Da    PI: 8.8475
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001925-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.62.2e-1539126186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W+++ + aLiea  + + +l+rg+l++++W+ev++++ + g   +r+ +qCk++++ l+k+yk +k    +     +s +++f++l+
  AHYPO_001925-RA  39 CWSEESTSALIEAWGSHHLSLNRGNLRQHHWSEVAAVVNSSGEnrRRTDTQCKNRIDTLKKKYKIEKSKTVDSFGSYVSPWRFFSRLD 126
                      7*************************************8888732559*******************9999987788889****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.4463298IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.5E-535100IPR009057Homeodomain-like
PfamPF138379.9E-2337126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEINGDDTSP PPSFRRKQRP HSFTDRFNFK SVPVLREDCW SEESTSALIE AWGSHHLSLN  60
RGNLRQHHWS EVAAVVNSSG ENRRRTDTQC KNRIDTLKKK YKIEKSKTVD SFGSYVSPWR  120
FFSRLDYLIA GVSEDSVSSR KVSPETPVPT NFPVAPRSMI TRKRTSMVDD SFFRRNFVDV  180
VAAAAKVEEE EERGRVSSER TGTFSGVTRR EQTEREENGS CKDGCRQLAE AIMRFGEVYE  240
RVEAVKQEQL IELEKHRLEF VKDLEYQRMK LFMDTQIQLA RIKRSKHSDG AVKLAIYTKV  300
LEGELSCFSK IWMHFSTAGL NIVCMCGPDV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842554.11e-126trihelix transcription factor ASIL2-like
TrEMBLA0A0K9RWV01e-124A0A0K9RWV0_SPIOL; Uncharacterized protein
STRINGXP_010689829.11e-105(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-55sequence-specific DNA binding transcription factors