PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001872-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family TALE
Protein Properties Length: 588aa    MW: 65119.8 Da    PI: 7.2813
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001872-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.99.5e-103944262254
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      ++yp+ ++++ LA+++gLt +qV++WF N R +
  AHYPO_001872-RA 394 HPYPTDNDKQLLATQTGLTRNQVSNWFINARVR 426
                      89*****************************88 PP
2BELL93.12.6e-30247315472
             BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      + +++ka Ll+++eeV+kr+kqy++q+q+v+s+F+ v gl  a+pY+s   k+iSrhFrcLk+aia+qi
  AHYPO_001872-RA 247 DCHERKATLLHMQEEVCKRHKQYHQQMQMVVSAFDSVPGLSDATPYISRSIKTISRHFRCLKNAIADQI 315
                      6789****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.9E-41173313IPR006563POX domain
PfamPF075262.3E-34178312IPR006563POX domain
PROSITE profilePS5007112.017367430IPR001356Homeobox domain
SMARTSM003898.0E-10370434IPR001356Homeobox domain
CDDcd000862.98E-12370431No hitNo description
SuperFamilySSF466896.84E-17372436IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-28373434IPR009057Homeodomain-like
PfamPF059201.5E-17387426IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MEMSNNLIQD LHVAQQRRRD KLRVQQHFDD NNNTSQLLLP PEMLNFNPFS NIHPTRFVAP  60
SSSDSCDPNW VPSFQMDYPN NVSNWANFVT HGNDTSGLSL SLSSNQICGY QEGGDPDPDP  120
DPHLHPRDMK PFEPVGISSV VTKQCTSQVP DMGGGPTSIH SMDQNVGPLG PFTGYTAILK  180
SSKFLKPAQV LLDEFFSAAG LWRGNDGSEN AQNVPNIGNC YTGSGSKTHG SNDLSCRSST  240
CEPYRPDCHE RKATLLHMQE EVCKRHKQYH QQMQMVVSAF DSVPGLSDAT PYISRSIKTI  300
SRHFRCLKNA IADQIKLIKR ALGEDISSSA SFLKGDSRSS SSLRFDQNFA KFKPGSVGEI  360
AHGGHQNHVW RPQRGLPERA VSILRAWLFD HFLHPYPTDN DKQLLATQTG LTRNQVSNWF  420
INARVRLWKP MVEEIHMLET KGGSRSETHS NNTVMSVIAK NRDHAAAVNQ SGCQPAVNIG  480
ACDSKQLECL EPSTSLERPI RGETTNTEQF FQKCSRIGNH HVPNEIDNSF IGFLPCQRQG  540
LELGGLGAVS LTLGLRHGSE TSQQQLQHQF IPQGMSFGGH VIHDFSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-16376433158Homeobox protein Meis1
4xrs_B3e-16376433158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021766465.10.0BEL1-like homeodomain protein 9 isoform X1
TrEMBLA0A0K9QCS30.0A0A0K9QCS3_SPIOL; Uncharacterized protein
STRINGXP_010689104.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.15e-83BEL1-like homeodomain 8