PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001767-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 453aa    MW: 49765 Da    PI: 5.6406
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001767-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.21.6e-2847103259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGqK+vkg+e+ r+YY+Ct+++C++kk+vers+ d+++++i+  g+H+h 
  AHYPO_001767-RA  47 EDGYNWRKYGQKNVKGNEYIRNYYKCTHPNCQAKKQVERSQ-DGRITDIIKLGNHDHA 103
                      8****************************************.***************7 PP
2WRKY97.68.4e-31186239659
                      -EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   6 nWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +WrKYGqK+vkg+++prsYYrC+++gCpvkk+ver+++dpk+v++tYeg+H+h+
  AHYPO_001767-RA 186 RWRKYGQKMVKGNPNPRSYYRCSTTGCPVKKHVERASHDPKIVITTYEGQHDHS 239
                      7****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-2539105IPR003657WRKY domain
SuperFamilySSF1182908.11E-2344105IPR003657WRKY domain
SMARTSM007745.9E-3146104IPR003657WRKY domain
PROSITE profilePS5081120.8447105IPR003657WRKY domain
PfamPF031061.6E-2147102IPR003657WRKY domain
PROSITE profilePS5081132.328176241IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-30177241IPR003657WRKY domain
SuperFamilySSF1182906.15E-26181241IPR003657WRKY domain
SMARTSM007742.4E-33181240IPR003657WRKY domain
PfamPF031061.3E-23186238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MVTNEENALI VAPSDKLPQS LSPDSSIHTS SADREANASI VLEKPAEDGY NWRKYGQKNV  60
KGNEYIRNYY KCTHPNCQAK KQVERSQDGR ITDIIKLGNH DHAKPHSDPQ AAVPSPLSVK  120
VPERPPLAVN EDKPPVVHTP ATDHGEKMDV DEQALAVRTD DTTPASLTPS SHARDDTSEI  180
LTPKRRWRKY GQKMVKGNPN PRSYYRCSTT GCPVKKHVER ASHDPKIVIT TYEGQHDHSM  240
PPIRTIVPQP AAAATGGTEP NGMSKSKSDE SDPEKGDSVD PTTQDEKKLA IVMKSGDPIN  300
VSTEQEANHE AEKPVQETDL RAEKPVQETN LGAEKLEQET NLGAEKPVQE TNRGAEKPEQ  360
ETNHGAEKPV QETNRGAEKP EKETEQETDC KAEKTDHVTQ TAEKIIVAVP LDMKPESAST  420
EVKRPDSIVV DNSRAETKSN GLQRPNPEAV NC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-28422421075WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666094.11e-170PREDICTED: WRKY transcription factor 1
TrEMBLA0A0J8B8Q21e-169A0A0J8B8Q2_BETVU; Uncharacterized protein
STRINGXP_010666094.11e-170(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.28e-64zinc-dependent activator protein-1