PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001766-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 364aa    MW: 42806.4 Da    PI: 9.0077
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001766-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.29.5e-11711501598
                      -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
               B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                       l +p ++ +++g    ++k + l+ ++gr+W+v+l      +  +l+ GW+   +   +++g +vvF+++++ ++f  +v++f+
  AHYPO_001766-RA  71 KLEIPQDYQKKYGAT-LNNKHVYLQVRDGRVWRVEL--GHEHENLWLALGWNMLYETYSIQDGYVVVFRYIHQtNKF--NVSIFD 150
                      4779999*9999644.56789***************..999999***************************965666..999997 PP
2B340.64.7e-131612391799
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ++p+++++++g ++ ++  ++l+ ++gr+W v+l   k s+  +l+ GWk+  +   L++g fvvF+ +++sef  ++++f++
  AHYPO_001766-RA 161 SIPNDYVKKYGASQLTNDFVKLRVSQGRVWMVEL--LKESNILWLAHGWKNLYDHYSLQDGYFVVFRNIKNSEF--NISIFDT 239
                      8*********888888899***************..*******************************8887888..9999987 PP
3B336.87.2e-12271355186
                      EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      f+ ++  s+v ++ r+++p ++++++  ++  ++++++l+ ++ + ++ kl+   k ++  +++ W++Fv +n +k gD++vF+l++
  AHYPO_001766-RA 271 FKIIMQASNVENRFRVSFPIHHVRNYlPLN--SKQEVILKGPNQKCYKTKLNLYFKTSQAEIQNKWSKFVYENMVKLGDTCVFELVR 355
                      5667788999999**********9998666..4558***************77555556679**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-1656151IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-1556151IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.98357152IPR003340B3 DNA binding domain
CDDcd100172.49E-1259150No hitNo description
SMARTSM010190.008260147IPR003340B3 DNA binding domain
PfamPF023624.2E-872150IPR003340B3 DNA binding domain
SMARTSM010193.8E-7148240IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-14159240IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-14160239IPR015300DNA-binding pseudobarrel domain
CDDcd100178.93E-12161238No hitNo description
PfamPF023622.3E-10161239IPR003340B3 DNA binding domain
PROSITE profilePS5086310.715162240IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-15264356IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-17265357IPR015300DNA-binding pseudobarrel domain
CDDcd100177.84E-17269357No hitNo description
SMARTSM010191.5E-5271364IPR003340B3 DNA binding domain
PfamPF023628.6E-11271356IPR003340B3 DNA binding domain
PROSITE profilePS508639.925271364IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
FPSFSPQNNA QKKPSVDVAG SPPPLLHPPS SRDTKKMKCE SSGSRNTTIP TNSIHSNTYF  60
YKVITPTCRY KLEIPQDYQK KYGATLNNKH VYLQVRDGRV WRVELGHEHE NLWLALGWNM  120
LYETYSIQDG YVVVFRYIHQ TNKFNVSIFD LTSNEIEYDE SIPNDYVKKY GASQLTNDFV  180
KLRVSQGRVW MVELLKESNI LWLAHGWKNL YDHYSLQDGY FVVFRNIKNS EFNISIFDTT  240
QNKIEYQQDN FYKDGVTDGF DEDFQSNNPY FKIIMQASNV ENRFRVSFPI HHVRNYLPLN  300
SKQEVILKGP NQKCYKTKLN LYFKTSQAEI QNKWSKFVYE NMVKLGDTCV FELVRTNPII  360
YNIT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-12B3 family protein