PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_001524-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | bHLH | ||||||||
Protein Properties | Length: 282aa MW: 30539 Da PI: 5.7205 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.9 | 1e-09 | 161 | 208 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq AHYPO_001524-RA 161 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYVQSLQ 208 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 8.70E-10 | 155 | 212 | No hit | No description |
SuperFamily | SSF47459 | 4.97E-17 | 155 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.0E-17 | 157 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.459 | 157 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-7 | 161 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.0E-10 | 163 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MDPPLINEGS FATSNPSLSE IWPFNHGGNC DGNEMLGLKI GNGGFVNGLI DGLFKGDGSM 60 EESTVTGQSG SLDCSNGRKR RENFSEDESS KLVSTICSAN ELKYSNAKRI KTSCSQDENG 120 SSKVRGETSS ASGNNNHAEK PAEPPKDFIH VRARRGQATD SHSLAERARR EKISERMKIL 180 QDLVPGCNKV IGKALVLDEI INYVQSLQRQ VEFLSMKLEA VNSGVIPSSS SFPSKDVNLL 240 EVSSFDPNGM MFRTQAARDF AAGQQSEWLH MQLGGNFDQT A* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010678640.1 | 1e-141 | PREDICTED: transcription factor bHLH79 | ||||
Swissprot | Q9LV17 | 1e-74 | BH079_ARATH; Transcription factor bHLH79 | ||||
TrEMBL | A0A0K9R5V2 | 1e-117 | A0A0K9R5V2_SPIOL; Uncharacterized protein | ||||
STRING | XP_010678640.1 | 1e-140 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62610.1 | 2e-72 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_001524-RA |
Publications ? help Back to Top | |||
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