PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001248-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NAC
Protein Properties Length: 300aa    MW: 34790.2 Da    PI: 6.7214
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001248-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM129.42.8e-40151483127
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                      pGfrF Pt+eel+++yL++k++g + ++++vi+ v iy+++PwdLpk      k + + +ew+fF++++kk+a g r+nr t +gyWkatg+  
  AHYPO_001248-RA  15 PGFRFYPTEEELISFYLQQKLNGGRPDIDRVIPVVYIYDYNPWDLPKlsgdgcKSDPQLQEWFFFIPKHKKEAAGGRPNRLTGNGYWKATGSPG 108
                      9***************************99****************66777543333666********************************** PP

              NAM  91 evlsk.kgelvglkktLvfykg..rapkgektdWvmheyr 127
                       v+s+ +++ +glk+t+v+y+g  r+++g+ktdW ++ey 
  AHYPO_001248-RA 109 YVYSStDNKIIGLKRTMVYYNGraRSRSGSKTDWKINEYI 148
                      ***9977888**********763367889**********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.46213170IPR003441NAC domain
SuperFamilySSF1019412.09E-4014156IPR003441NAC domain
PfamPF023651.3E-2015147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MANKEYEDNE IIEIPGFRFY PTEEELISFY LQQKLNGGRP DIDRVIPVVY IYDYNPWDLP  60
KLSGDGCKSD PQLQEWFFFI PKHKKEAAGG RPNRLTGNGY WKATGSPGYV YSSTDNKIIG  120
LKRTMVYYNG RARSRSGSKT DWKINEYIAA SSTNPPSVYK KSKCLRAFDR RPAAPPPIIR  180
RPVLNHQLDH HDHHPSSSTD HHDRNLTSRV EILRFITSES SSSSGDQYNN NNNNNNNNNN  240
NNNNNNNNNN NILSQGYNYI NNNYEQENNN IMKMEIDEQQ TVTVWDDCDW DWTMMNWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-281514717138Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683676.11e-104PREDICTED: NAC domain-containing protein 90
SwissprotQ9M2908e-51NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBLA0A0K9R2522e-96A0A0K9R252_SPIOL; Uncharacterized protein
STRINGXP_010683676.11e-103(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.12e-49NAC domain containing protein 61