PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_001195-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Trihelix

Protein Properties

Length: 533aa MW: 62111.2 Da PI: 6.963

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_001195-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	73.9	2.8e-23	121	199	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l L+e+r++++++++++++k+plW+e e+g++r+ k+C+ek+enl k+ykk+keg+ +r ++ +++++f+ql+a AHYPO_001195-RA 121 RWPRQETLSLLEVRSKLDHKFKEANQKAPLWDE------EHGYQRTGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFKQLDA 199 8*****************************7......**************************98..55667*****85 PP
2	trihelix	43.5	8.4e-14	368	438	1	68
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenl..nkrykkikege 68 +W ++ev Li++r++me+r+++ g l+ lWe++++km+ g+ +s + Ckekw+++ n+ y ++k+++ AHYPO_001195-RA 368 QWLESEVTRLIQLRSSMESRFQQcGFLEDVLWEDIGAKMSFFGYDKSGIVCKEKWDSIiiNNNYFQEKDNN 438 7*******************9788****************************954488888888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	5.482	121	172	IPR017877	Myb-like domain
CDD	cd12203	1.12E-16	121	179	No hit	No description
Pfam	PF13837	3.5E-13	121	200	No hit	No description
PROSITE profile	PS50090	6.539	361	426	IPR017877	Myb-like domain
CDD	cd12203	8.06E-15	367	435	No hit	No description
Pfam	PF13837	2.2E-9	367	438	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence Send to blast
MEMEEQYTIS DLRHFISIPT TLSHLQPPLL PPPSSDLFSS THYNHRGILP SAVETTHQQP 60 QNGYETMVLA RNMGLGVDHH MLLHNSTKIT STNNIIDNVV PNSSGSHSHT HTHCGDGGVV 120 RWPRQETLSL LEVRSKLDHK FKEANQKAPL WDEEHGYQRT GKKCREKFEN LYKYYKKTKE 180 GKAGRQDGKH YRFFKQLDAL FGENHPLNNS ENTHQISEII PSFNKNPTIP TNLGTFENNP 240 LNCPPSVSLS NSSNYDTSSL DDIIREKKKK RGKGNWKAKI KEFLDYQMRK IMEKQEDWVE 300 KMMKIMENRE KERIEREEQW RKQEIERMEK EYKFWANERA WIEARDLVIK SALEKISNDH 360 DHDHDENQWL ESEVTRLIQL RSSMESRFQQ CGFLEDVLWE DIGAKMSFFG YDKSGIVCKE 420 KWDSIIINNN YFQEKDNNLI IRDINYEVKK KRKENYGEVS NTNNDYNNNN SDHNEGCGGI 480 RELYMNNHLG SLSTNCEFNN NNNPRLQLNE GSSSPSSHNS NVNQKIMGWH SG*

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence Send to blast

MEMEEQYTIS DLRHFISIPT TLSHLQPPLL PPPSSDLFSS THYNHRGILP SAVETTHQQP  60
QNGYETMVLA RNMGLGVDHH MLLHNSTKIT STNNIIDNVV PNSSGSHSHT HTHCGDGGVV  120
RWPRQETLSL LEVRSKLDHK FKEANQKAPL WDEEHGYQRT GKKCREKFEN LYKYYKKTKE  180
GKAGRQDGKH YRFFKQLDAL FGENHPLNNS ENTHQISEII PSFNKNPTIP TNLGTFENNP  240
LNCPPSVSLS NSSNYDTSSL DDIIREKKKK RGKGNWKAKI KEFLDYQMRK IMEKQEDWVE  300
KMMKIMENRE KERIEREEQW RKQEIERMEK EYKFWANERA WIEARDLVIK SALEKISNDH  360
DHDHDENQWL ESEVTRLIQL RSSMESRFQQ CGFLEDVLWE DIGAKMSFFG YDKSGIVCKE  420
KWDSIIINNN YFQEKDNNLI IRDINYEVKK KRKENYGEVS NTNNDYNNNN SDHNEGCGGI  480
RELYMNNHLG SLSTNCEFNN NNNPRLQLNE GSSSPSSHNS NVNQKIMGWH SG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021743338.1	1e-165	trihelix transcription factor PTL-like
TrEMBL	A0A0K9QYQ7	1e-146	A0A0K9QYQ7_SPIOL; Uncharacterized protein
STRING	XP_010683862.1	1e-158	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	3e-67	Trihelix family protein

Link Out ? help Back to Top
Phytozome	AHYPO_001195-RA