PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001173-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Trihelix
Protein Properties Length: 445aa    MW: 51923.2 Da    PI: 5.9922
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001173-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.52.1e-24113214186
         trihelix   1 rWtkqevlaLiearremeerlrrgk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 
                      +Wt+++v++Li a+ +++++ +++                +kk++W++vsk+m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++
  AHYPO_001173-RA 113 KWTDNMVRLLIMAVYYIGDEAGNEIgsekkkpglgsggllQKKGKWKSVSKAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtSCKVVEN 206
                      7**************8887777532224567888999999**********************************************669999** PP

         trihelix  79 cpyfdqle 86 
                        ++++++
  AHYPO_001173-RA 207 QNLLESMD 214
                      99999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-22111239No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MYSNNGVGML GLEMPLHQST QPQNPQHQQM IALTQQQYEQ QQQTQLSMKQ PTNNLSYNNQ  60
NNPNPYHKPK TQITQLTNSD EDEPISTNDH DQIISMERKR KGSNTISPWQ RMKWTDNMVR  120
LLIMAVYYIG DEAGNEIGSE KKKPGLGSGG LLQKKGKWKS VSKAMMEKGF YVSPQQCEDK  180
FNDLNKRYKR VNDILGKGTS CKVVENQNLL ESMDLNPKLK EEVRKLLNSK HLFFREMCAY  240
HNSCSHGSVN PSSIPNHQQN HQKQESCSHS AAIPAASIEP EKIELGLDNH DDEDEEDDDD  300
EHEDDEFDDD EDQDELVEGN PRKRARISYE FQELNGEIME VLQNRGKTSM EKKQWMMIQL  360
VKFEEKGLKL QFEALKLENE RLKWIRFSSK KEREMEKMKI ENERKRLENE RMMLLLKQKE  420
IELVVENHPQ HQHQHQQYPP TNQS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021737784.11e-159uncharacterized protein LOC110704305
TrEMBLA0A2K1XDC91e-134A0A2K1XDC9_POPTR; Uncharacterized protein
STRINGXP_010683922.11e-156(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.13e-81sequence-specific DNA binding transcription factors