PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001145-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 315aa    MW: 34258.9 Da    PI: 7.4278
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001145-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017125147123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+ksFs+   L  H  +H
  AHYPO_001145-RA 125 YECKTCNKSFSSFQALGGHRASH 147
                      99**********99999998887 PP
2zf-C2H213.60.00019217239123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  Fs+   L  H+r+H
  AHYPO_001145-RA 217 HECSICGAEFSSGQALGGHMRRH 239
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.1E-12124149IPR007087Zinc finger, C2H2
SuperFamilySSF576675.23E-6124152No hitNo description
SMARTSM003550.041125147IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.99125152IPR007087Zinc finger, C2H2
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
SuperFamilySSF576671.99E-5215240No hitNo description
PfamPF139123.8E-13216241IPR007087Zinc finger, C2H2
SMARTSM003550.01217239IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743217239IPR007087Zinc finger, C2H2
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MVAQQQQQPI LTNNTSTNHN TIMMIKGKRT KRSRTLCPFS LTMSTTTTAT TNSDETAFLN  60
SATSEELAAP AANSSSVTTI SDDEDVDMAH CLILLAKGST TAMATTTSAA TATAKNAQND  120
EITTYECKTC NKSFSSFQAL GGHRASHKKP KLTTPSLSPS SVAFALDHHQ HHNNHPDNHH  180
QNQQFNNQDC TTLSLQIQTP ILNINNNNNN NKITKVHECS ICGAEFSSGQ ALGGHMRRHR  240
PIITTKIDNN TTTTTTTTTT TTTRNLLPLD LNLPAPDDHD EQQQQNSLSS KFVFPSNEKT  300
LVFSASSKLV DCHY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021774557.15e-86zinc finger protein ZAT5-like
TrEMBLA0A0K9S1P07e-80A0A0K9S1P0_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-36C2H2 family protein