PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001120-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 305aa    MW: 34034 Da    PI: 5.2238
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001120-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH185.1e-06176225455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      + +e+  rRR  i ++   L++llP  +   ++ + +  +i+   + YIk+Lq
  AHYPO_001120-RA 176 KRSEANSRRRTIIAQKVKALKDLLPGtL---KGSRGNQESIVHDFTSYIKYLQ 225
                      4578889*******************88...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.13E-4168229No hitNo description
PROSITE profilePS5088810.493172224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-6176233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-6182234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MINGELKSFS AADCYNTSLS LIPADPTSHI TMCSQDWDGD TTLSASRFSG VQTNTMYNVT  60
ANPHSVALAD HNLQMPDPLI NNFELETCDN PVESSQIPFG WPQESIGNNM LNNFLEEPVS  120
SETCMNMDWK EAELRQSVHT VNLNDANEFQ SSFKGEEHTS YSAPKPSRSM CKKTKKRSEA  180
NSRRRTIIAQ KVKALKDLLP GTLKGSRGNQ ESIVHDFTSY IKYLQLQLKE LSRNRLGGES  240
GSSPLRFIEG YGHYHPDAQK FDESLEEIFG SLFEENPAAA QEILKNNGLY TVPVTSFEAF  300
LCKR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021760157.18e-82uncharacterized protein LOC110724982 isoform X2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.13e-13LJRHL1-like 2