PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_000797-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

CAMTA

Protein Properties

Length: 926aa MW: 105340 Da PI: 7.986

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_000797-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	164	2.6e-51	29	146	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 +ke k+rwl+++ei+aiL n++ ++++ ++ + pk g+++L++rkk+r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ p+f AHYPO_000797-RA 29 MKEaKSRWLRPNEIHAILFNYTYFDIHVKPVSLPKGGTIVLFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGTEERIHVYYAHGEDSPNF 122 45559*************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhylevk 118 rrcywlL+++le+ivlvhy+e++ AHYPO_000797-RA 123 VRRCYWLLDKALEHIVLVHYRETQ 146 *******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	75.515	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	9.3E-73	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	6.9E-45	31	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	2.8E-12	378	464	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	2.3E-17	560	674	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.84E-17	560	670	No hit	No description
SuperFamily	SSF48403	4.82E-18	561	673	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.831	569	670	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	6.9E-7	583	673	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.381	611	643	IPR002110	Ankyrin repeat
SMART	SM00248	3.4E-6	611	640	IPR002110	Ankyrin repeat
SMART	SM00248	3000	650	679	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	4.6E-6	723	825	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	6.668	759	783	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	24	774	796	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.87	775	804	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.012	797	819	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.908	798	822	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	5.2E-4	799	819	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	13	877	899	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.297	879	907	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 926 aa Download sequence Send to blast
MENRSNGLLG GCEIHGFRTM EDLDIPNIMK EAKSRWLRPN EIHAILFNYT YFDIHVKPVS 60 LPKGGTIVLF DRKKLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGTEERIH VYYAHGEDSP 120 NFVRRCYWLL DKALEHIVLV HYRETQEASP ITPVDSGFRS DLSEYSASQL LSRGNETLVN 180 KVYYPAMKDL TESGESINVT NHEIQLHEIN TLDWDELLVS NDLNEATFIS KEQTPCLQQD 240 KHPAVNISKN NGDFLLTRTP HPDLLTSRNS MKPTPEISSS HMGDKFLPLF GLQTNQKDDS 300 RVCNMGTVDD RNFSDRMDKD GLLSQDSLGR WMNEIIVDSP ESVNDPSYES SVATSHGSIV 360 SSAAVDHEGP VPAQIFCITD VSPSWAYSTE ETKILVVGFF HQEYQHLAKS TIYCVCGDTL 420 YPAEIIQVGV FRCLVSPHSF GSVNFYLSID GKTPISQILT FEFRAPASTN VVRKDNSQWN 480 MFRIQIRLAH LLYSTSKSLD ILSSNISPSS LKEGKNFALK YSNISDSWAY FSKLIESGKI 540 SFDRAKDCLF ELSMKSRLKE WLLERVVDGS KISERDTEGQ GVLHLCAILG YTWAVYPFSC 600 CGLSLDFRDK FGWTALHWAA YYGREKMVAA LLSAGAKPNL VTDPTSDNPG GCTAADVAAK 660 QGFEGLAAYL SEKSLVQQFE DMKIAGNAGG SLETHTYESQ ITSDITEEDL YLKDTLAAYR 720 TAADAAARIQ VAFRETTLKQ RTKAVEGSNP ESEARYIVAA MKIQHAYRNY EVRKQIAAAA 780 RIQFRFRTWK LRKDFLNKRR QAIKIQAIFR GFRVRREYRK ITWSVGVLEK AILRWRRKRR 840 GFCGLKVEIK EPSDDQKRES DTEEDFYRAS RKQAEERVEK AVVRVQSMFR SKQAQQEYRR 900 MKLAHTQAQL GYGEAVDPYD FLSEM*

Sequence ? help Back to Top

Protein Sequence Length: 926 aa Download sequence Send to blast

MENRSNGLLG GCEIHGFRTM EDLDIPNIMK EAKSRWLRPN EIHAILFNYT YFDIHVKPVS  60
LPKGGTIVLF DRKKLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGTEERIH VYYAHGEDSP  120
NFVRRCYWLL DKALEHIVLV HYRETQEASP ITPVDSGFRS DLSEYSASQL LSRGNETLVN  180
KVYYPAMKDL TESGESINVT NHEIQLHEIN TLDWDELLVS NDLNEATFIS KEQTPCLQQD  240
KHPAVNISKN NGDFLLTRTP HPDLLTSRNS MKPTPEISSS HMGDKFLPLF GLQTNQKDDS  300
RVCNMGTVDD RNFSDRMDKD GLLSQDSLGR WMNEIIVDSP ESVNDPSYES SVATSHGSIV  360
SSAAVDHEGP VPAQIFCITD VSPSWAYSTE ETKILVVGFF HQEYQHLAKS TIYCVCGDTL  420
YPAEIIQVGV FRCLVSPHSF GSVNFYLSID GKTPISQILT FEFRAPASTN VVRKDNSQWN  480
MFRIQIRLAH LLYSTSKSLD ILSSNISPSS LKEGKNFALK YSNISDSWAY FSKLIESGKI  540
SFDRAKDCLF ELSMKSRLKE WLLERVVDGS KISERDTEGQ GVLHLCAILG YTWAVYPFSC  600
CGLSLDFRDK FGWTALHWAA YYGREKMVAA LLSAGAKPNL VTDPTSDNPG GCTAADVAAK  660
QGFEGLAAYL SEKSLVQQFE DMKIAGNAGG SLETHTYESQ ITSDITEEDL YLKDTLAAYR  720
TAADAAARIQ VAFRETTLKQ RTKAVEGSNP ESEARYIVAA MKIQHAYRNY EVRKQIAAAA  780
RIQFRFRTWK LRKDFLNKRR QAIKIQAIFR GFRVRREYRK ITWSVGVLEK AILRWRRKRR  840
GFCGLKVEIK EPSDDQKRES DTEEDFYRAS RKQAEERVEK AVVRVQSMFR SKQAQQEYRR  900
MKLAHTQAQL GYGEAVDPYD FLSEM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	88	RKKLRNFRKDGHNWKKKK
2	72	87	KKLRNFRKDGHNWKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021835012.1	0.0	calmodulin-binding transcription activator 5 isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A0K9QKS6	0.0	A0A0K9QKS6_SPIOL; Uncharacterized protein
STRING	XP_010671665.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	AHYPO_000797-RA

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]