PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_000714-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | B3 | ||||||||
Protein Properties | Length: 255aa MW: 29626.1 Da PI: 8.9459 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.4 | 2.3e-17 | 19 | 103 | 7 | 97 |
.-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS B3 7 psdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 p++ k ++p f+ ++ g++++ k +l+d++ + W++k++ +++ +++GW++F+k+++Lk gD++vFk+ g f +v+++ AHYPO_000714-RA 19 PASLKKP---SIPDAFMMKYlgGINEKDAKIAKLKDKTQKIWNIKMSLDGRH----FEDGWQQFCKDHDLKIGDILVFKYLGYaLVF--HVTIY 103 5444444...7**********98888889999**************666655....899********************99843444..66665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.12E-20 | 7 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.8E-20 | 7 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.829 | 10 | 106 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.19E-18 | 11 | 103 | No hit | No description |
SMART | SM01019 | 1.8E-16 | 13 | 106 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.8E-14 | 24 | 100 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.46E-11 | 134 | 233 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-7 | 135 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.033 | 139 | 236 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDTEFYRPSN PHFFVPLIPA SLKKPSIPDA FMMKYLGGIN EKDAKIAKLK DKTQKIWNIK 60 MSLDGRHFED GWQQFCKDHD LKIGDILVFK YLGYALVFHV TIYGNTCCDG LENHVENGHR 120 KRPRDNNDAL LNPSGYPHFQ FTVMRSNLTT GVIRVPLKFA KENKLLNRWC DVEIMDVKGR 180 SMKRKFRRSR TVKDGNHFIC CRPSFYSDYD IKQGDELLLH LISNGPTPVF KFYIIKTIRE 240 DDDEDVWTLL NNGD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 4e-30 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_000714-RA |