PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000661-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 452aa    MW: 50856.4 Da    PI: 7.8257
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000661-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00032287305119
                      EEETTTTEEESSHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrH 19 
                      y+C  Cg +F+ ++ L rH
  AHYPO_000661-RA 287 YTCAECGLHFKLQERLARH 305
                      9****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484643.14E-3963186IPR008942ENTH/VHS
Gene3DG3DSA:1.25.40.902.4E-4364187IPR008942ENTH/VHS
PROSITE profilePS5139136.83764192IPR006569CID domain
SMARTSM005821.6E-4367189IPR006569CID domain
CDDcd035622.17E-3969180No hitNo description
PfamPF048181.2E-8120173IPR006903RNA polymerase II-binding domain
PROSITE profilePS501579.328287314IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
METESSRRPP FDRSRDLITK KARLTEDSTT PNSRQFQHPL QQQRSVIDRG SEDSSRGSLE  60
QFQQHQELVN QYKTALAELT FNSKPIISNL TIIAGENLQA AKAIADTICA NIIEVPSDQK  120
LPSLYLLDSI VKNIGRDYIK YFAGRLPEVF CKAYRLVNPS VHSGMRHLFG TWKGVFPPQP  180
LQIIEKELGF PTAATGQLSG TTVSKSNSQS QLQSHSIHVN PRYLEARQRL QQSSKKASSL  240
DSKGKTLDTS KSTQEEDGDL IGLEFKPCVL RDLHPDVIDR LSDNLPYTCA ECGLHFKLQE  300
RLARHSEWYA LKKSMRNCLN KPIRRWYSKS CDWISGKAGF PFGYNSTCLM DGSIRTREEN  360
EKMVPADESQ CVCLLCGELL EDFFCQERDQ WVFKGAAYFS TMSESDGEGS RDDDGSHKIN  420
VHDFVKQPVV TNDGSGGPRK RVAIIVFGSW C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1sz9_A7e-17681728112PCF11 protein
1sz9_B7e-17681728112PCF11 protein
1sz9_C7e-17681728112PCF11 protein
1sza_A7e-17681728112PCF11 protein
1sza_B7e-17681728112PCF11 protein
1sza_C7e-17681728112PCF11 protein
2bf0_X7e-176817213117PCF11
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683870.11e-115PREDICTED: polyadenylation and cleavage factor homolog 4
TrEMBLA0A0K9R4K21e-113A0A0K9R4K2_SPIOL; Uncharacterized protein
STRINGXP_010683870.11e-114(Beta vulgaris)