PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000644-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Trihelix
Protein Properties Length: 323aa    MW: 37120.2 Da    PI: 9.8459
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000644-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.51.5e-17117199164
         trihelix   1 rWtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykki 64 
                      +Wt+++v++Li a+ +++++ +++                    +kk++W++vs++m+e+gf +sp+qC++k+++lnkr k+ 
  AHYPO_000644-RA 117 KWTDNMVRLLIMAVYYIGDEAGSEIgpekkkpgpggstsgsgllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRKKAR 199
                      7**************99888886422344678888899999999**********************************96665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-15115197No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEGNGLSRRM YSNTGVGIHG LEMPLNQQQQ QQMMAFAQQQ QTQLSMKQPT NYLPYNTQNP  60
NPNPNPNPNP CHKPKTQLTQ MTNSDEDEQA TANDHENTSM EGKRKGSGNM SPWQRMKWTD  120
NMVRLLIMAV YYIGDEAGSE IGPEKKKPGP GGSTSGSGLL QKKGKWKSVS RAMMEKGFYV  180
SPQQCEDKFN DLNKRKKARG NLEALQKLNG EVMGMLQDGN RSSMEKKQWV MTQLVELEEQ  240
GLKFQFEALE LEKQRLKWIR FSSKKEREME KMKIDNERKR LENERMVLLL RQKEIEFINE  300
PQHQSQRQLQ HTPPTNPSCL TA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021737784.18e-76uncharacterized protein LOC110704305
TrEMBLA0A445E7696e-59A0A445E769_ARAHY; Uncharacterized protein
STRINGXP_010683922.11e-70(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.19e-24sequence-specific DNA binding transcription factors