PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_000642-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 84aa MW: 10037.5 Da PI: 11.4 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67 | 2.4e-21 | 17 | 69 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t++q+e Le+ Fe++++++ +++ +LA++lgL rqV vWFqNrRa++k AHYPO_000642-RA 17 KRRLTTNQIELLENSFEEEKKLDPDRKMKLARELGLHHRQVAVWFQNRRARWK 69 4689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 93 | 3.2e-30 | 17 | 75 | 3 | 61 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEk 61 krrl+++q++lLE+sFeee+kL+p+rK++lareLgl+ rqvavWFqnrRAR+k+k+l + AHYPO_000642-RA 17 KRRLTTNQIELLENSFEEEKKLDPDRKMKLARELGLHHRQVAVWFQNRRARWKAKKLQH 75 9*******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.43E-20 | 8 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.427 | 11 | 71 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.6E-17 | 14 | 75 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.92E-12 | 15 | 72 | No hit | No description |
Pfam | PF00046 | 1.7E-18 | 17 | 69 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 18 | 77 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.9E-6 | 42 | 51 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 46 | 69 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.9E-6 | 51 | 67 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 84 aa Download sequence Send to blast |
MRASSCNNSN HEEIKIKRRL TTNQIELLEN SFEEEKKLDP DRKMKLAREL GLHHRQVAVW 60 FQNRRARWKA KKLQHLTTSS NRR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 65 | 73 | ARWKAKKLQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010683925.2 | 2e-29 | PREDICTED: homeobox-leucine zipper protein ATHB-22 | ||||
Refseq | XP_021743188.1 | 6e-30 | homeobox-leucine zipper protein ATHB-22-like | ||||
Swissprot | Q9LZR0 | 1e-25 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A2Z6ZYE9 | 1e-25 | A0A2Z6ZYE9_9LAMI; Homeobox-leucine zipper protein ATHB-51 | ||||
STRING | XP_010683925.1 | 9e-30 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 6e-28 | homeobox 51 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_000642-RA |
Publications ? help Back to Top | |||
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