PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000547-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 342aa    MW: 37379.1 Da    PI: 9.788
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000547-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.8e-062951123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C+k F r  nL+ H r H
  AHYPO_000547-RA 29 FVCEICNKGFQRDQNLQLHRRGH 51
                     89*******************88 PP
2zf-C2H214.69.8e-05106128123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k +  +s+ k H +t+
  AHYPO_000547-RA 106 WKCEKCSKKYAVQSDWKAHTKTC 128
                      58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.87E-72851No hitNo description
Gene3DG3DSA:3.30.160.601.0E-52851IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0172951IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9492951IPR007087Zinc finger, C2H2
PfamPF121715.0E-52951IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
SMARTSM0035510071101IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.3E-594127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.87E-7101126No hitNo description
SMARTSM00355130106126IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MNLQAIGGDD PDAEVIALSP KTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR  60
SNKEVVKKKV YICPEKTCVH HDPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKKYAVQSD  120
WKAHTKTCGT REYKCDCGTL FSRKDSFITH RAFCDALAEE STSTNTIAPS STLSFNTNPN  180
TNKSMVNISQ GLDQINHVPG ISHFINSGSL YSHNQTNSNT LTPMSATALL QKAAQMGSTR  240
SNHNSSFQGS SMGAPENISH GDGRFATVGS SMAATSVSNL SQLMMGGTKT HNDNGLTRDF  300
LGMRPIGDGS TSPRPFLPQD LVSFGSMTSS MGRFDVGFGN H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-36102168369Zinc finger protein JACKDAW
5b3h_F3e-36102168369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016542707.11e-130PREDICTED: zinc finger protein JACKDAW-like isoform X1
SwissprotO227591e-111IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A1U8E6431e-129A0A1U8E643_CAPAN; zinc finger protein JACKDAW-like isoform X1
TrEMBLA0A2G2V7B71e-129A0A2G2V7B7_CAPBA; Protein indeterminate-domain 12
STRINGPOPTR_0016s08990.11e-128(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-102indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]